Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

4 accessions found for Burkholderia multivorans ATCC 17616  

Data for AP009388  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009388.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009388_0075 CDS_99465-98059 68.7 1.4e-20 1
AP009388_0093 CDS_118333-116939 62.0 1e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009388_0075 1/1 242 308 .. 1 87 [] 68.7 1.4e-20
AP009388_0093 1/1 244 310 .. 1 87 [] 62.0 1e-18

Alignments of top-scoring domains:
AP009388_0075: domain 1 of 1, from 242 to 308: score 68.7, E = 1.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +nl+H++RTPLt ++++a++ l +++s+++
AP009388_0 242 RLSQFSSNLAHDMRTPLTNLQAAAQVVLS---------QPRSADE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +e+ ++e +rl+r+i+d+L l+r e+
AP009388_0 278 ---------YRSVIESSIDEYQRLSRMIEDMLFLARSEQA 308

AP009388_0093: domain 1 of 1, from 244 to 310: score 62.0, E = 1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f ++l+H++RTPL+ ++ +++ l ++++++
AP009388_0 244 RLSQFSSDLAHDMRTPLANVISSSQVTLS---------RPRTSDE-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ ++++ ++e erl+r+i+++L l+r e+
AP009388_0 280 ---------YEALIDSNIEECERLQRMIENMLFLARTENA 310


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 2 0|==
-12 11 2|=*=========
-11 10 15|========== *
-10 19 28|=================== *
-9 22 29|====================== *
-8 17 22|================= *
-7 23 14|=============*=========
-6 9 8|=======*=
-5 8 4|===*====
-4 5 2|=*===
> -3 5 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 14.4017
P(chi-square) = 0.01325

Total sequences searched: 138

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: