Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Streptomyces griseus subsp. griseus NBRC 13350  

Data for AP009493  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AP009493.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009493_2275 CDS_2691305-2689830 106.8 6e-30 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009493_2275 1/1 293 362 .. 1 76 [. 106.8 6e-30

Alignments of top-scoring domains:
AP009493_2275: domain 1 of 1, from 293 to 362: score 106.8, E = 6e-30
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQ+r+ ++e +eaL+E+++RV S
AP009493_2 293 EIHHRVKNNLQTVAALLRLQSRRMDSEQG-----REALNEAVRRVGS 334

mAliHEeLYksedldtvdfseYlekLten<-*
+A++HE L+++ d ++v+f+e +++++
AP009493_2 335 IAIVHETLSQNLD-ERVEFDEIADRVIAM 362


Histogram of all scores:
score obs exp (one = represents 36 sequences)
----- --- ---
-15 9 0|=
-14 44 0|==
-13 143 44|=*==
-12 489 468|============*=
-11 2112 1305|====================================*======================
-10 1567 1688|============================================ *
-9 1029 1426|============================= *
-8 784 956|====================== *
-7 370 568|=========== *
-6 316 316|========*
-5 119 170|====*
-4 68 90|==*
-3 44 47|=*
-2 20 24|*
-1 11 12|*
0 7 6|*
1 2 3|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 958.6592
P(chi-square) = 0

Total sequences searched: 7138

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: