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Classification of phyla is from NCBI page
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39 projects found  

1 accessions found for Microcystis aeruginosa NIES-843  

Data for AP009552  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009552.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009552_2169 CDS_1948701-1946692 97.3 4.8e-27 1
AP009552_3608 CDS_3255134-3253137 90.8 3.5e-25 1
AP009552_3172 CDS_2892887-2890500 75.0 1e-20 1
AP009552_4894 CDS_4486964-4488889 72.4 5.6e-20 1
AP009552_4989 CDS_4566124-4567473 69.4 3.9e-19 1
AP009552_0210 CDS_180485-178494 68.6 6.4e-19 1
AP009552_1225 CDS_1070667-1069492 64.9 7.6e-18 1
AP009552_4225 CDS_3889855-3890961 64.2 1.1e-17 1
AP009552_2350 CDS_2122187-2120883 63.7 1.6e-17 1
AP009552_4807 CDS_4408233-4410461 60.1 1.7e-16 1
AP009552_4371 CDS_4031671-4029476 60.0 1.8e-16 1
AP009552_5265 CDS_4828130-4829431 59.6 2.4e-16 1
AP009552_4461 CDS_4102626-4103732 55.2 4e-15 1
AP009552_0891 CDS_776584-775727 49.5 1.8e-13 1
AP009552_1227 CDS_1073587-1071281 45.8 1.9e-12 1
AP009552_6082 CDS_5629504-5628350 42.9 1.2e-11 1
AP009552_0321 CDS_279199-277748 33.1 7.3e-09 1
AP009552_1441 CDS_1284556-1285812 29.9 6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009552_2169 1/1 206 272 .. 1 87 [] 97.3 4.8e-27
AP009552_3608 1/1 421 489 .. 1 87 [] 90.8 3.5e-25
AP009552_3172 1/1 290 358 .. 1 87 [] 75.0 1e-20
AP009552_4894 1/1 394 461 .. 1 87 [] 72.4 5.6e-20
AP009552_4989 1/1 197 260 .. 1 87 [] 69.4 3.9e-19
AP009552_0210 1/1 411 478 .. 1 87 [] 68.6 6.4e-19
AP009552_1225 1/1 162 230 .. 1 87 [] 64.9 7.6e-18
AP009552_4225 1/1 146 210 .. 1 87 [] 64.2 1.1e-17
AP009552_2350 1/1 212 279 .. 1 87 [] 63.7 1.6e-17
AP009552_4807 1/1 514 587 .. 1 87 [] 60.1 1.7e-16
AP009552_4371 1/1 366 437 .. 1 87 [] 60.0 1.8e-16
AP009552_5265 1/1 196 260 .. 1 87 [] 59.6 2.4e-16
AP009552_4461 1/1 145 213 .. 1 87 [] 55.2 4e-15
AP009552_0891 1/1 43 110 .. 1 87 [] 49.5 1.8e-13
AP009552_1227 1/1 526 594 .. 1 87 [] 45.8 1.9e-12
AP009552_6082 1/1 155 227 .. 1 87 [] 42.9 1.2e-11
AP009552_0321 1/1 260 304 .. 1 65 [. 33.1 7.3e-09
AP009552_1441 1/1 158 222 .. 1 87 [] 29.9 6e-08

Alignments of top-scoring domains:
AP009552_2169: domain 1 of 1, from 206 to 272: score 97.3, E = 4.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++ l+ + d+ s+e
AP009552_2 206 AKSEFLANMSHELRTPLNAILGFTRLISR--------DSSISSEY-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yle++ r++e+ll+Lind+L++s+ieag
AP009552_2 243 ----------RQYLEIVNRSGEHLLELINDILEMSKIEAG 272

AP009552_3608: domain 1 of 1, from 421 to 489: score 90.8, E = 3.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f++n+sHELRTPL I+ ++e+L e++ ++ls+ ++
AP009552_3 421 AKSQFISNVSHELRTPLFNIKSFIETLTEFG-------EDLSDTEK- 459

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+let+ +e++rl rL+nd+Ldlsr+e+
AP009552_3 460 ----------REFLETANHETDRLTRLVNDVLDLSRLESS 489

AP009552_3172: domain 1 of 1, from 290 to 358: score 75.0, E = 1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla +sHE++ PLta++g++ lL+e ++ +el++ q
AP009552_3 290 LKDEFLACVSHEFKSPLTAVIGLSNLLRE------QKIGELNPRQ-- 328

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y + i+r++++l +L+ndlLdl+r+e+g
AP009552_3 329 ----------SKYADLIYRSGRQLMALVNDLLDLTRLETG 358

AP009552_4894: domain 1 of 1, from 394 to 461: score 72.4, E = 5.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++flan sHELRTPL++I+g + + + +++eq
AP009552_4 394 LKNQFLANTSHELRTPLNGIIGSIRCVMD---------GFCNSEQEE 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+ +++++ +ll++i+d+L +++ieag
AP009552_4 432 ----------KEYLQQADKASVHLLEIIDDILSIAKIEAG 461

AP009552_4989: domain 1 of 1, from 197 to 260: score 69.4, E = 3.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sHELR+P+++I+++++++ + +++ qr
AP009552_4 197 SLKQFTADASHELRNPIATIQTNVQMAIA---------YPQTGHQR- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+r +erl +L+ndlL l+r ++g
AP009552_4 234 -------------LQVIDRLTERLGNLVNDLLFLARSDSG 260

AP009552_0210: domain 1 of 1, from 411 to 478: score 68.6, E = 6.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s ++a HELRTPL++I+ +e L ++++++e r
AP009552_0 411 TRSNLVAITGHELRTPLSTIQVCLESLAS--------EPDMPAEIR- 448

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+t+l++aer+++Li+d+L+lsr+e+g
AP009552_0 449 ----------QIMLDTALKDAERMRKLIQDFLTLSRLESG 478

AP009552_1225: domain 1 of 1, from 162 to 230: score 64.9, E = 7.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+++lsH++R+PL+ I++ a lL+e +++ l+ +q+
AP009552_1 162 LKTEFVSMLSHDFRNPLNKILLSAGLLEE-------SRDRLTKDQQ- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ i+++++ +++L+ ++L + r+++g
AP009552_1 201 ----------VSYFRMIRSAIKDMDQLLTEVLLIGRADSG 230

AP009552_4225: domain 1 of 1, from 146 to 210: score 64.2, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ +l HELRTPLt++rgy+e L + ++ +
AP009552_4 146 RRQELIGDLTHELRTPLTVVRGYLEELAD---------GAIKPNP-- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +++ +e++rl+rL dl +lsr+e+g
AP009552_4 182 -----------ELYQKLVKETRRLERLTHDLQELSRAESG 210

AP009552_2350: domain 1 of 1, from 212 to 279: score 63.7, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k ++++++sHE+RTPLt+I+ +++lL+++l +++
AP009552_2 212 LKIQLFSMISHEFRTPLTVILSASQLLENGL-------KDADQSS-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +i+++++ +++ + d+L l+r+e+g
AP009552_2 250 ----------RKNLYRIQSSVKLMNQFLTDILILTRAESG 279

AP009552_4807: domain 1 of 1, from 514 to 587: score 60.1, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefl +lsHELRTP+t+Ir+++e+L+ l++d+ + +
AP009552_4 514 LKSEFLKTLSHELRTPITSIRLAVETLES-----LLEDQGIEIDPQ- 554

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++l+++ e++r ++L+ndlL+l+ ++a+
AP009552_4 555 -------DSIGQLLQILNIESQRQSKLVNDLLTLTYLDAE 587

AP009552_4371: domain 1 of 1, from 366 to 437: score 60.0, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefl n+sHEL TPLt I+g++++L++ +a l+++++
AP009552_4 366 CKSEFLNNISHELLTPLTCIIGLSSTLQK----CSAANNFLPPDKQ- 407

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl++i++ ++ ll+LindlL +s+ ag
AP009552_4 408 ----------KHYLKVIQDNGNKLLELINDLLNFSQVSAG 437

AP009552_5265: domain 1 of 1, from 196 to 260: score 59.6, E = 2.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++l HELRTPLt+I++++e+L++ l +++
AP009552_5 196 NRERAFSDLTHELRTPLTSISLLTEALQK----------RLQAPE-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le + +e+erl++L+ d L++s ++a
AP009552_5 231 ----------RRWLEQMGKEVERLSQLVCDWLEISELQAD 260

AP009552_4461: domain 1 of 1, from 145 to 213: score 55.2, E = 4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++ + H+LRTPL ++ +el +e+l+ +e ++e
AP009552_4 145 QKEDFVSRMTHDLRTPLVSVNHILELFQEGLY------GEITPEM-- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i+r+ + ll+++n+lL+ e+g
AP009552_4 184 ----------SRVIHVIIRSNQNLLEMVNNLLEVYCYENG 213

AP009552_0891: domain 1 of 1, from 43 to 110: score 49.5, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla ++HELR PL++++ + +l+l++l e ++e+
AP009552_0 43 LKSSFLARVAHELRSPLSSMISLHQLILADL-------CESPAEE-- 80

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ + ++ l ++++++ ls++e+g
AP009552_0 81 ----------REFIAQGQLAGCKLMAMVDEMINLSKLESG 110

AP009552_1227: domain 1 of 1, from 526 to 594: score 45.8, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ +sH+L PL+ + y++lL++++ +el+e+
AP009552_1 526 ELKKFAYVASHDLQEPLNQVANYVQLLEMRYT------EELDEDA-- 564

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ + + + ++ Li+d+L +s+ + +
AP009552_1 565 ----------KEFITFAVEGVSLMQTLIDDVLAYSKVDMQ 594

AP009552_6082: domain 1 of 1, from 155 to 227: score 42.9, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
k++ la+l+H+LR PLta + ++e+L+ + dte+s + r
AP009552_6 155 FKDQILAMLAHDLRSPLTAASIAVETLEL----AyHQPDTERSLQLR 197

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + ++++ + ++rLi d+L+ s+ a
AP009552_6 198 -----------EQLHQQARKQFRIMNRLITDILQASKSMAA 227

AP009552_0321: domain 1 of 1, from 260 to 304: score 33.1, E = 7.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e+l++l HE+RTPLt+Ir+ + lLl+ +++ +e+
AP009552_0 260 CDLELLRALTHEIRTPLTTIRTITRLLLK--------RAKVTEDV-- 296

peLRledpeyreyletil<-*
++yleti+
AP009552_0 297 ----------QKYLETID 304

AP009552_1441: domain 1 of 1, from 158 to 222: score 29.9, E = 6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l + H++R+PLta++++ +lLl+ l ee +
AP009552_1 158 WQRQRLDTFLHQIRNPLTALKTFGKLLLK---------RLLAEEGN- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ilre++r ++Li ++ ++i+++
AP009552_1 195 ----------DPAITGILRESDRVRDLIAEF--EAQIQQE 222


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 7 0|=
-14 85 0|=====
-13 299 4|*=================
-12 613 144|========*============================
-11 786 748|===========================================*===
-10 955 1388|========================================================= *
-9 965 1433|========================================================= *
-8 966 1073|========================================================= *
-7 646 676|====================================== *
-6 371 389|======================*
-5 241 213|============*==
-4 153 114|======*==
-3 82 60|===*=
-2 49 31|=*=
-1 44 16|*==
0 12 8|*
1 9 4|*
2 0 2|*
3 1 1|*
4 4 0|=
5 2 0|=
> 6 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 1906.6891
P(chi-square) = 0

Total sequences searched: 6312

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: