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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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5 accessions found for Sphingobium japonicum UT26S  

Data for AP010803  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AP010803.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010803_2338 CDS_2352127-2353692 65.6 1.5e-18 1
AP010803_1627 CDS_1617478-1618491 45.2 9.6e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010803_2338 1/1 330 377 .. 1 53 [. 65.6 1.5e-18
AP010803_1627 1/1 145 228 .. 1 94 [] 45.2 9.6e-13

Alignments of top-scoring domains:
AP010803_2338: domain 1 of 1, from 330 to 377: score 65.6, E = 1.5e-18
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+I+SL++L+ar++ d e+ ea q+RV +
AP010803_2 330 EVHHRVKNNLQIIASLINLHARSAHDAEA-----VEAYATIQRRVDA 371

mAliHE<-*
+ +H+
AP010803_2 372 LSVVHR 377

AP010803_1627: domain 1 of 1, from 145 to 228: score 45.2, E = 9.6e-13
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRV NNLQv++++L+LQ r ++ + + aL ++ R +
AP010803_1 145 ELQHRVSNNLQVVAAILSLQRRHVDHDVA-----RRALDDASARLAL 186

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+ i + LY + + +++++l+ Lt++ +++ g++++ + +
AP010803_1 187 VGRISRALYNPSG-EGQNVRSFLTTLTADVLEASGRDDIVLT----V 228


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 14 0|=
-14 46 0|===
-13 88 22|=*====
-12 260 231|=============*==
-11 951 645|=====================================*==================
-10 764 835|============================================= *
-9 584 705|=================================== *
-8 388 473|======================= *
-7 172 281|=========== *
-6 137 156|=========*
-5 62 84|====*
-4 24 44|==*
-3 17 23|=*
-2 8 12|*
-1 5 6|*
0 1 3|*
1 1 1|*
2 2 0|=
3 1 0|=
4 0 0|
5 0 0|
> 6 4 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 450.7986
P(chi-square) = 0

Total sequences searched: 3529

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: