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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

7 accessions found for Azospirillum sp. B510  

Data for AP010946  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP010946.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010946_0942 CDS_1070384-1068603 98.5 9.8e-28 1
AP010946_2428 CDS_2765876-2761974 95.5 7.3e-27 1
AP010946_0680 CDS_764102-761367 95.1 9.1e-27 1
AP010946_1350 CDS_1550808-1547392 93.7 2.3e-26 1
AP010946_0646 CDS_723627-726821 92.6 4.7e-26 1
AP010946_2714 CDS_3104725-3108579 91.7 8.4e-26 1
AP010946_2455 CDS_2797395-2794636 91.1 1.3e-25 1
AP010946_0379 CDS_426875-428179 89.9 2.8e-25 1
AP010946_0896 CDS_1015103-1012800 89.3 4.1e-25 1
AP010946_2615 CDS_2990055-2988013 88.7 6e-25 1
AP010946_0695 CDS_781329-780058 87.3 1.5e-24 1
AP010946_2715 CDS_3108744-3111065 87.0 1.8e-24 1
AP010946_0023 CDS_21556-23088 83.5 1.8e-23 1
AP010946_0613 CDS_690745-692382 80.2 1.5e-22 1
AP010946_1947 CDS_2218404-2217163 78.2 5.7e-22 1
AP010946_0065 CDS_71930-73711 61.1 4.1e-17 1
AP010946_1508 CDS_1744109-1742895 59.1 1.5e-16 1
AP010946_1363 CDS_1565778-1564372 57.5 4.1e-16 1
AP010946_0273 CDS_305995-308061 57.1 5.3e-16 1
AP010946_0274 CDS_308295-310265 57.1 5.3e-16 1
AP010946_1096 CDS_1240955-1242166 55.5 1.6e-15 1
AP010946_1424 CDS_1637301-1638872 54.6 2.7e-15 1
AP010946_1344 CDS_1541528-1539156 54.1 3.8e-15 1
AP010946_2445 CDS_2786577-2783791 52.0 1.5e-14 1
AP010946_1267 CDS_1452887-1455418 48.2 1.8e-13 1
AP010946_2661 CDS_3046922-3045543 47.6 2.7e-13 1
AP010946_1654 CDS_1887717-1885948 46.8 4.7e-13 1
AP010946_2240 CDS_2549950-2552196 46.2 6.6e-13 1
AP010946_1212 CDS_1383307-1385838 45.9 8.3e-13 1
AP010946_1506 CDS_1741223-1738905 45.4 1.2e-12 1
AP010946_1136 CDS_1291266-1295882 45.0 1.4e-12 1
AP010946_0490 CDS_561738-560329 44.7 1.8e-12 1
AP010946_0272 CDS_303769-305877 43.0 5.4e-12 1
AP010946_0696 CDS_781347-783386 41.1 1.9e-11 1
AP010946_1083 CDS_1223204-1224634 40.6 2.5e-11 1
AP010946_0735 CDS_838065-835951 39.8 4.4e-11 1
AP010946_0944 CDS_1073188-1071023 39.7 4.6e-11 1
AP010946_0697 CDS_783691-785943 37.4 2.2e-10 1
AP010946_1803 CDS_2064120-2061910 35.0 1e-09 1
AP010946_0667 CDS_747927-749621 34.8 1.1e-09 1
AP010946_2266 CDS_2575887-2577581 34.4 1.5e-09 1
AP010946_2611 CDS_2985269-2982480 32.6 4.8e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010946_0942 1/1 368 436 .. 1 87 [] 98.5 9.8e-28
AP010946_2428 1/1 492 557 .. 1 87 [] 95.5 7.3e-27
AP010946_0680 1/1 201 266 .. 1 87 [] 95.1 9.1e-27
AP010946_1350 1/1 440 505 .. 1 87 [] 93.7 2.3e-26
AP010946_0646 1/1 367 432 .. 1 87 [] 92.6 4.7e-26
AP010946_2714 1/1 569 634 .. 1 87 [] 91.7 8.4e-26
AP010946_2455 1/1 377 442 .. 1 87 [] 91.1 1.3e-25
AP010946_0379 1/1 202 271 .. 1 87 [] 89.9 2.8e-25
AP010946_0896 1/1 514 582 .. 1 87 [] 89.3 4.1e-25
AP010946_2615 1/1 440 509 .. 1 87 [] 88.7 6e-25
AP010946_0695 1/1 176 245 .. 1 87 [] 87.3 1.5e-24
AP010946_2715 1/1 554 622 .. 1 87 [] 87.0 1.8e-24
AP010946_0023 1/1 247 314 .. 1 87 [] 83.5 1.8e-23
AP010946_0613 1/1 305 374 .. 1 87 [] 80.2 1.5e-22
AP010946_1947 1/1 183 252 .. 1 87 [] 78.2 5.7e-22
AP010946_0065 1/1 343 408 .. 1 87 [] 61.1 4.1e-17
AP010946_1508 1/1 150 214 .. 1 87 [] 59.1 1.5e-16
AP010946_1363 1/1 262 323 .. 1 87 [] 57.5 4.1e-16
AP010946_0273 1/1 462 529 .. 1 87 [] 57.1 5.3e-16
AP010946_0274 1/1 416 483 .. 1 87 [] 57.1 5.3e-16
AP010946_1096 1/1 27 92 .. 1 87 [] 55.5 1.6e-15
AP010946_1424 1/1 279 349 .. 1 87 [] 54.6 2.7e-15
AP010946_1344 1/1 433 498 .. 1 87 [] 54.1 3.8e-15
AP010946_2445 1/1 506 571 .. 1 87 [] 52.0 1.5e-14
AP010946_1267 1/1 475 540 .. 1 87 [] 48.2 1.8e-13
AP010946_2661 1/1 249 307 .. 1 87 [] 47.6 2.7e-13
AP010946_1654 1/1 370 437 .. 1 87 [] 46.8 4.7e-13
AP010946_2240 1/1 392 456 .. 1 87 [] 46.2 6.6e-13
AP010946_1212 1/1 470 536 .. 1 87 [] 45.9 8.3e-13
AP010946_1506 1/1 514 585 .. 1 87 [] 45.4 1.2e-12
AP010946_1136 1/1 1167 1232 .. 1 87 [] 45.0 1.4e-12
AP010946_0490 1/1 239 295 .. 1 87 [] 44.7 1.8e-12
AP010946_0272 1/1 476 543 .. 1 87 [] 43.0 5.4e-12
AP010946_0696 1/1 291 365 .. 1 87 [] 41.1 1.9e-11
AP010946_1083 1/1 251 318 .. 1 87 [] 40.6 2.5e-11
AP010946_0735 1/1 426 494 .. 1 87 [] 39.8 4.4e-11
AP010946_0944 1/1 466 540 .. 1 87 [] 39.7 4.6e-11
AP010946_0697 1/1 515 580 .. 1 87 [] 37.4 2.2e-10
AP010946_1803 1/1 366 432 .. 1 87 [] 35.0 1e-09
AP010946_0667 1/1 167 232 .. 1 87 [] 34.8 1.1e-09
AP010946_2266 1/1 299 388 .. 1 87 [] 34.4 1.5e-09
AP010946_2611 1/1 562 628 .. 1 87 [] 32.6 4.8e-09

Alignments of top-scoring domains:
AP010946_0942: domain 1 of 1, from 368 to 436: score 98.5, E = 9.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g+a++L ++ +++++++
AP010946_0 368 AKSEFLANMSHELRTPLNAIIGFADVLMS------GIFGPAPPKH-- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl i++++++ll+L+n+lLd+++ieag
AP010946_0 407 ----------AEYLTAIHQSGRHLLDLVNELLDMAKIEAG 436

AP010946_2428: domain 1 of 1, from 492 to 557: score 95.5, E = 7.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++aI+g+++lL+ tel+ q
AP010946_2 492 AKSEFLANMSHEIRTPMNAILGLIHLLQQ---------TELTGRQ-- 527

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++++ +a++ll ++nd+Ld+s+ eag
AP010946_2 528 ----------ADYVQKVRVSAQSLLGILNDILDFSKVEAG 557

AP010946_0680: domain 1 of 1, from 201 to 266: score 95.1, E = 9.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g++ lL++ tel++ q
AP010946_0 201 AKSAFLATMSHEIRTPMNGVLGMLGLLER---------TELDDHQ-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + t++++a+ llr+i+d+Ld+s+ieag
AP010946_0 237 ----------RDTVGTMRESANALLRIIDDILDFSKIEAG 266

AP010946_1350: domain 1 of 1, from 440 to 505: score 93.7, E = 2.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k efla++sHE+RTP+++++g+a lLl+ t+l ++q
AP010946_1 440 IKMEFLATMSHEIRTPMNGVIGMAGLLLD---------TALQADQ-- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y eti+++ae+ll ind+Ld+s+i+ag
AP010946_1 476 ----------RGYAETIRDSAESLLVVINDILDFSKIDAG 505

AP010946_0646: domain 1 of 1, from 367 to 432: score 92.6, E = 4.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++I+g++elL+ t l+ +q
AP010946_0 367 AKSLFLATMSHEIRTPMNGIQGMLELLEH---------TSLTGDQ-- 402

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++++++++a ll +ind+Ld+s+ieag
AP010946_0 403 ----------RELVSVVRESAGALLTIINDILDFSKIEAG 432

AP010946_2714: domain 1 of 1, from 569 to 634: score 91.7, E = 8.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k efla++sHE+RTP+++++g++el+ t+l+eeq
AP010946_2 569 SKAEFLATMSHEIRTPMNGVLGMLELMAL---------TPLDEEQ-- 604

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++t+++++ llr+i+d+Ldls+ieag
AP010946_2 605 ----------RTLVSTMRDSGAALLRIIDDILDLSKIEAG 634

AP010946_2455: domain 1 of 1, from 377 to 442: score 91.1, E = 1.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla++sHE+RTPL++++g+a+lLl+ tel++eq
AP010946_2 377 VKSEFLASMSHEIRTPLNGVIGFADLLLA---------TELTPEQ-- 412

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+ +++++ ll++i d+Ld+s+ieag
AP010946_2 413 ----------RQYVALQREAGRGLLAIIGDILDYSKIEAG 442

AP010946_0379: domain 1 of 1, from 202 to 271: score 89.9, E = 2.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ flan+sHE+RTPLta++g+aelL+ + l++ +
AP010946_0 202 AKTAFLANMSHEIRTPLTAMMGFAELLEQ---------EVLGPHAI- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p yrey + i +++++l +LindlLdls+++a
AP010946_0 239 -------PLYREYARDIAESGRHLMELINDLLDLSKADAD 271

AP010946_0896: domain 1 of 1, from 514 to 582: score 89.3, E = 4.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+eflan+sHELRTPL+aI+g+ae+L e++ ++ +e q
AP010946_0 514 AKTEFLANMSHELRTPLNAIIGFAEVLSSEFF------GTVNERQ-- 552

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++++++ll+++n +Ld+s++e g
AP010946_0 553 ----------KSCITDIHDSGRHLLDIVNAVLDMSKLEFG 582

AP010946_2615: domain 1 of 1, from 440 to 509: score 88.7, E = 6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPL+aI+g+++++l el+ ++l+++
AP010946_2 440 AKSAFLATMSHELRTPLNAIIGFSDIMLHELF------GPLGSPR-- 478

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+y++ +++++++ll+Lind+Ld+s++eag
AP010946_2 479 ---------YRDYVRHVQNSGRHLLDLINDVLDMSKLEAG 509

AP010946_0695: domain 1 of 1, from 176 to 245: score 87.3, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla +sHELRTPL+a++g++e+Ll+e++ ++l+ +
AP010946_0 176 AKSAFLAQMSHELRTPLNAVLGFSEMLLTEAF------GPLGNPR-- 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr y+ i++++ +ll+Li+d+L+lsr++ g
AP010946_0 215 ---------YRSYVGDIRDAGTHLLALIDDILELSRLDGG 245

AP010946_2715: domain 1 of 1, from 554 to 622: score 87.0, E = 1.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+an+sH LRTPL++I+g+ae+L ++++ +e++ q
AP010946_2 554 LKSEFIANVSHHLRTPLNGIIGFAEVLANQYF------GEMNQRQ-- 592

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++il ++erll+Li+d+ dl+ ++ag
AP010946_2 593 ----------MEYVRSILAAGERLLELIDDVVDLTSLGAG 622

AP010946_0023: domain 1 of 1, from 247 to 314: score 83.5, E = 1.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL++++g++e+L+ +++++++++
AP010946_0 247 MRADFIANASHELRTPLSSLLGFIETLRG---------PARDDPEAQ 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +++++a r+ rL+ndlL lsrie
AP010946_0 285 ----------DRFLAIMHDQASRMARLVNDLLSLSRIELD 314

AP010946_0613: domain 1 of 1, from 305 to 374: score 80.2, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+a +sHELRTPL+a++g+++lL+ ++ +++++ q+
AP010946_0 305 AKSTFIAVMSHELRTPLNAVIGFSQLLELQAG------DAAGDGQL- 344

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i ++++rll++i+d+Ld++r e+g
AP010946_0 345 ----------LSCVDAIGQAGRRLLAIIDDILDMARVESG 374

AP010946_1947: domain 1 of 1, from 183 to 252: score 78.2, E = 5.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +fla +sHELRTPL++I+g+a++L e+ ++l+ ++
AP010946_1 183 AKLDFLAVMSHELRTPLNSIIGFADVLAGEGM------GKLGHPD-- 221

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey++ i++++++ll ++n++Ld++r +g
AP010946_1 222 ---------YLEYVKLIEESGRSLLTMVNNILDYTRGSTG 252

AP010946_0065: domain 1 of 1, from 343 to 408: score 61.1, E = 4.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HE+++PLt++r ++e+ + ++ +r
AP010946_0 343 AIERFAADVAHEIKNPLTSLRSAVETVAR----------VSDPRHR- 378

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i ++++rl+rLi+d+ sr++a+
AP010946_0 379 ----------DRLMAIIADDVQRLDRLISDISNASRLDAE 408

AP010946_1508: domain 1 of 1, from 150 to 214: score 59.1, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+l+HE ++PL++Irg+a+lL+e ++s+++
AP010946_1 150 SVTAMAAMLAHEVKNPLSGIRGAAQLLEE----------NASDQD-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +ea+r+ +L+n++ +s +
AP010946_1 185 ----------RVLTRLICDEADRIVALVNRMEVFSDERPL 214

AP010946_1363: domain 1 of 1, from 262 to 323: score 57.5, E = 4.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+la++sH+LRTPLt ++++++++ + ++l++e
AP010946_1 262 QRTEMLAGVSHDLRTPLTRMKLALDMIGD---------PDLDPEV-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ ++ ++++i+ L ++r e
AP010946_1 298 --------------EELKADVTEMEEMIEGYLAFARGEGT 323

AP010946_0273: domain 1 of 1, from 462 to 529: score 57.1, E = 5.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+lsHE+RTPL+aI+g+a++++ ++el ++ +
AP010946_0 462 EQRSFVAMLSHEFRTPLAAIQGAAQMIEL--------SGELRAPSM- 499

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i + ++r+++L++ +L +++g
AP010946_0 500 ----------QSRVRRIVETTRRMSDLVELFLSADALDQG 529

AP010946_0274: domain 1 of 1, from 416 to 483: score 57.1, E = 5.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+lsHE+RTPL+aI+g+a++++ ++el ++ +
AP010946_0 416 EQRSFVAMLSHEFRTPLAAIQGAAQMIEL--------SGELRAPSM- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i + ++r+++L++ +L +++g
AP010946_0 454 ----------QSRVRRIVETTRRMSDLVELFLSADALDQG 483

AP010946_1096: domain 1 of 1, from 27 to 92: score 55.5, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+PL a+ +++ +L + + +
AP010946_1 27 AKSKFLAAASHDLRQPLQALFFLSAALAR---------HVGDHSG-- 62

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+++++ ++ + L++ lL+ sr+eag
AP010946_1 63 ----------RDLLSRLDQGLDTMKGLLDGLLEVSRLEAG 92

AP010946_1424: domain 1 of 1, from 279 to 349: score 54.6, E = 2.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a+++HE+ +PL++Ir+ +e +l++ld ++l e+ r+
AP010946_1 279 TLGTLAAGMAHEMSQPLNVIRLWTENMLTRLD------QNLLEPARA 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ +++++er+ +Li+ ++++ r + g
AP010946_1 320 ----------ERALRLVIEQTERMGKLIDHVRTFGRRDGG 349

AP010946_1344: domain 1 of 1, from 433 to 498: score 54.1, E = 3.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sH+LR+PL ++ ++a++L + +l +
AP010946_1 433 AKTKFLAAASHDLRQPLQSLFFFAHALSD----------KLENHPT- 468

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l ++ ++++ l+ +++ lLd sr++ag
AP010946_1 469 ----------APLLASMTDSLNGLRVMLDSLLDVSRLDAG 498

AP010946_2445: domain 1 of 1, from 506 to 571: score 52.0, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sH+LR+P+ ++ +++ +L + ++ +
AP010946_2 506 GKSKFLAAASHDLRQPVQSLYLFTAALGD---------RIQGHPA-- 541

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ i++ ++ l L++ lLd+sr+e+g
AP010946_2 542 ----------LPILDNIRQGLDTLKGLLDGLLDMSRLESG 571

AP010946_1267: domain 1 of 1, from 475 to 540: score 48.2, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+P+ +++++ e+L s+ +
AP010946_1 475 AKSKFLAAASHDLRQPVQSLMLLMEVLSS----------RVSDGMT- 510

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l t++r++ l L++ lLd sr+eag
AP010946_1 511 ----------RSVLGTMERALGALKMLLDGLLDVSRLEAG 540

AP010946_2661: domain 1 of 1, from 249 to 307: score 47.6, E = 2.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t +r+ ael ++
AP010946_2 249 DRTQMLAAISHDLRTPITRLRLRAELVED------------------ 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +++l +++ ++++i+ L ++r +a+
AP010946_2 278 ----------PEMQRRMLADLDEMEAMISATLAFARDDAQ 307

AP010946_1654: domain 1 of 1, from 370 to 437: score 46.8, E = 4.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl ++sHE+RTPL+ I +a+lL +++ + +e
AP010946_1 370 QQRQFLGMVSHEFRTPLAIIDSAAQLLAMRA-------GQVEPEM-- 407

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l +i+ +++rl Li+ ++ +r++ +
AP010946_1 408 ----------LERLAVIRGSVQRLTGLIDAHMTDERLQRN 437

AP010946_2240: domain 1 of 1, from 392 to 456: score 46.2, E = 6.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lta +++++lL + +l+++
AP010946_2 392 ALGQLTGGVAHDFNNLLTAALANLHLLGR----------HLPADG-- 426

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ ++er ++L ++lL +sr +a
AP010946_2 427 ----------QRFLAGARGALERAEKLTRQLLSFSRQDAV 456

AP010946_1212: domain 1 of 1, from 470 to 536: score 45.9, E = 8.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lta++g+++lLl +++ +q
AP010946_1 470 AVGQLAGGVAHDFNNLLTAMIGFCDLLLL---------RHKPGDQS- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +L+++lL +sr ++
AP010946_1 507 ----------FSDIMQIKQNANRAANLVRQLLAFSRQQTL 536

AP010946_1506: domain 1 of 1, from 514 to 585: score 45.4, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae L++++ +++ + e
AP010946_1 514 AWADVARRIAHEIKNPLTPIQLSAERLRRKY----LKEISSDTEV-- 554

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti r+++ ++r+++++ ++r+ ++
AP010946_1 555 ---------FTMCTDTIVRQVDDIRRMVDEFSAFARMPQP 585

AP010946_1136: domain 1 of 1, from 1167 to 1232: score 45.0, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla++sH+LR+P+ a ++ +lL + ++l++
AP010946_1 1167 GKTRFLAAASHDLRQPVQAAVLFQHLLST---------QDLPPAS-- 1202

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ + + l+++++++L +sr++ag
AP010946_1 1203 ----------ARVANSLGNTLTALQSMLDEILHISRLDAG 1232

AP010946_0490: domain 1 of 1, from 239 to 295: score 44.7, E = 1.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a+++HELRTPL+++ +++ l+ + +
AP010946_0 239 AQRSFIADAAHELRTPLAVLNAHLALIGA-------------PGA-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i +++ + rL+++lLdl+r++a
AP010946_0 271 ---------------AISEDVAGMARLVDQLLDLARLDAL 295

AP010946_0272: domain 1 of 1, from 476 to 543: score 43.0, E = 5.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+lsHE+RTPL+aI +a++++ ++ ++ +
AP010946_0 476 EQRSFVAMLSHEFRTPLAAIDSAAQMIEL--------TGTVAAPSV- 513

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ ++ + +L++ +L +++g
AP010946_0 514 ----------LNRLHRIRGTTRKMAELVELFLSADALDQG 543

AP010946_0696: domain 1 of 1, from 291 to 365: score 41.1, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++++a++sH+LR+PL+a+++++ +L +ld + ++ ++e +
AP010946_0 291 PVGRLFAAASHDLRQPLAALSLLIGTLDSRLD-QaTGVRPEGGTAA- 335

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+++ +++e+++++++ dl r+e+g
AP010946_0 336 -----------RDLLRSMAQAVESMRSMVDGHFDLVRLESG 365

AP010946_1083: domain 1 of 1, from 251 to 318: score 40.6, E = 2.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + +++H+LRTPLt +r +el+l +e ++++
AP010946_1 251 GMRQVTDSVAHDLRTPLTRLRSRIELALL---------HETEDPEV- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr l+ + ea+rll+ lL ++ +e+g
AP010946_1 288 ---------YRSVLQDTIVEADRLLATFTALLSIAEAESG 318

AP010946_0735: domain 1 of 1, from 426 to 494: score 39.8, E = 4.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl n+ HEL PLt I ++++L +l + l+ ++
AP010946_0 426 AKSDFLVNMGHELHGPLTEIVNASQTLMSDL-------HRLGVAEL- 464

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e i+ +e+l L++ +Ld+++ eag
AP010946_0 465 ----------AADVEHIQWTGEQLTGLVDAILDYAKVEAG 494

AP010946_0944: domain 1 of 1, from 466 to 540: score 39.7, E = 4.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y+ +l++l +++ ++ +++
AP010946_0 466 TMGEMASTLAHELNQPLSAIASYCTGCLNRL-----RSDRRDTQEV- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e++ +le++ +a+r ++++ d+ r + +
AP010946_0 507 ------VTEVAAALEKLAAQARRAGLVVRRIHDFVRKRDP 540

AP010946_0697: domain 1 of 1, from 515 to 580: score 37.4, E = 2.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+LR+P a++++ ++L +l+++ +
AP010946_0 515 AKSRFLAAASHDLRQPFQAMSLFHHILMS----------KLDDPGQ- 550

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ +++ + L++ lLd s +e g
AP010946_0 551 ----------REVATKLGEALTAGNMLLSTLLDTSALEVG 580

AP010946_1803: domain 1 of 1, from 366 to 432: score 35.0, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++HE+++ LtaI g+a l+++ ++++ + +
AP010946_1 366 AVGRMAGGIAHEFNNMLTAIGGFARLAER---------DPADRDRV- 402

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i ++++r +L +lLd+s +
AP010946_1 403 ----------LTCVGEIAKASDRAAALTGQLLDFSHRRVS 432

AP010946_0667: domain 1 of 1, from 167 to 232: score 34.8, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fl+++sH+LR+P a+ ++ +lL l+++ +
AP010946_0 167 AKGKFLSAASHDLRQPFQAMHLFHHLLSS----------RLTDPAA- 202

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +++++++ + L++ lL+ s +eag
AP010946_0 203 ----------IELANRLEQSIIGGETLLRALLEVSALEAG 232

AP010946_2266: domain 1 of 1, from 299 to 388: score 34.4, E = 1.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldk.........v.lag
++++++a+++HEL++PL+ + +++l +e +d + ++ + +l++
AP010946_2 299 SLGQLTAGIAHELKNPLNFVNNFSDLSEELFDElleflnpvkSgLPS 345

dtelseeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag
d+ + +++ L + l++i + ++r +r++ +Ld sr + g
AP010946_2 346 DAVEEVDSLIKDL-------QSNLRKIGEHGRRADRIVKSMLDHSRGGGG 388

<-*

AP010946_2 - -

AP010946_2611: domain 1 of 1, from 562 to 628: score 32.6, E = 4.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +l+H++++ L+ I+g+++++++++ + e +
AP010946_2 562 AVGQLSGGLAHDFNNLLSIIIGNLSAARDRY---------AAVEGL- 598

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yle ++r+++r ++ +lL +sr +
AP010946_2 599 ----------DSYLEPAQRAGRRGADITARLLAFSRQQPL 628


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 3 0|=
-13 18 2|*=
-12 97 66|======*===
-11 236 342|======================== *
-10 425 636|=========================================== *
-9 547 656|======================================================= *
-8 517 491|=================================================*==
-7 394 310|==============================*=========
-6 270 178|=================*=========
-5 134 97|=========*====
-4 78 52|=====*==
-3 47 27|==*==
-2 30 14|=*=
-1 25 7|*==
0 7 3|*
1 7 2|*
2 3 1|*
3 3 0|=
4 1 0|=
5 1 0|=
> 6 50 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 303.2363
P(chi-square) = 0

Total sequences searched: 2893

Whole sequence top hits:
tophits_s report:
Total hits: 42
Satisfying E cutoff: 42
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 42
Satisfying E cutoff: 42
Total memory: 37K


Acknowledgements:

This research is funded by:

Developed by: