Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Azospirillum sp. B510  

Data for AP010946  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: AP010946.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010946_1955 CDS_2227577-2225070 104.0 2.1e-35 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010946_1955 1/1 525 612 .. 1 85 [] 104.0 2.1e-35

Alignments of top-scoring domains:
AP010946_1955: domain 1 of 1, from 525 to 612: score 104.0, E = 2.1e-35
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
ELnHRV+N+L +V +++rQ+ +a++l++f++ ++gR+ AL+raHd+
AP010946_1 525 ELNHRVRNILGLVRALVRQSESGAETLQQFAAIVAGRIEALARAHDQ 571

VpLtrseWagAdLreLleaeLaPygged.....aeRitlsGPd<-*
+t ++W++A+Lr L++ae ++y ++++ + ++eR++lsGP+
AP010946_1 572 --ITADNWGPASLRTLIAAETGAYLSAGgvsagGERVRLSGPE 612


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 2 0|=
-13 22 0|===
-12 158 0|================
-11 229 23|==*====================
-10 408 299|=============================*===========
-9 495 740|================================================== *
-8 560 768|======================================================== *
-7 393 516|======================================== *
-6 256 281|========================== *
-5 147 139|=============*=
-4 99 66|======*===
-3 50 30|==*==
-2 31 14|=*==
-1 16 6|*=
0 9 2|*
1 6 1|*
2 6 0|=
3 1 0|=
> 4 5 -|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 2056.0378
P(chi-square) = 0

Total sequences searched: 2893

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: