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Classification of phyla is from NCBI page
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132 projects found  

7 accessions found for Azospirillum sp. B510  

Data for AP010947  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP010947.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010947_0262 CDS_329701-334269 86.3 1.2e-24 2
AP010947_0297 CDS_376389-374134 84.7 3.2e-24 1
AP010947_0009 CDS_10060-13308 72.4 9.6e-21 1
AP010947_0320 CDS_405026-401541 69.1 8.4e-20 1
AP010947_0306 CDS_384526-386052 63.2 4e-18 1
AP010947_0767 CDS_990511-991959 58.7 7.5e-17 1
AP010947_1037 CDS_1332971-1331190 56.4 3.4e-16 2
AP010947_0217 CDS_254375-256438 53.8 1.9e-15 1
AP010947_0008 CDS_10012-7991 44.8 6.4e-13 1
AP010947_0583 CDS_733662-731407 43.0 2.1e-12 1
AP010947_0309 CDS_390458-388701 41.6 5.2e-12 1
AP010947_0564 CDS_709015-707012 40.5 1.1e-11 1
AP010947_0853 CDS_1121032-1118483 40.0 1.5e-11 1
AP010947_0663 CDS_849091-846812 38.5 3.9e-11 1
AP010947_1067 CDS_1363866-1365251 35.8 2.3e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010947_0297 1/1 235 300 .. 1 87 [] 84.7 3.2e-24
AP010947_0009 1/1 524 593 .. 1 87 [] 72.4 9.6e-21
AP010947_0320 1/1 671 735 .. 1 87 [] 69.1 8.4e-20
AP010947_0306 1/1 258 324 .. 1 87 [] 63.2 4e-18
AP010947_0262 1/2 461 532 .. 1 87 [] 59.0 6.4e-17
AP010947_0767 1/1 262 327 .. 1 87 [] 58.7 7.5e-17
AP010947_1037 2/2 372 438 .. 1 87 [] 56.4 3.5e-16
AP010947_0217 1/1 324 389 .. 1 87 [] 53.8 1.9e-15
AP010947_0008 1/1 273 338 .. 1 87 [] 44.8 6.4e-13
AP010947_0583 1/1 525 593 .. 1 87 [] 43.0 2.1e-12
AP010947_0309 1/1 206 272 .. 1 87 [] 41.6 5.2e-12
AP010947_0564 1/1 436 504 .. 1 87 [] 40.5 1.1e-11
AP010947_0853 1/1 240 297 .. 1 79 [. 40.0 1.5e-11
AP010947_0663 1/1 364 429 .. 1 87 [] 38.5 3.9e-11
AP010947_1067 1/1 208 303 .. 1 87 [] 35.8 2.3e-10
AP010947_0262 2/2 1016 1082 .. 1 87 [] 27.3 5.9e-08

Alignments of top-scoring domains:
AP010947_0297: domain 1 of 1, from 235 to 300: score 84.7, E = 3.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTP+ta++g+ +lLl t l+e+q+
AP010947_0 235 AKSRFLAMMSHELRTPMTAVIGMGDLLLG---------TGLNEQQI- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++t++++a+ l ++nd+Ld+s+ieag
AP010947_0 272 -----------ALVKTLRSSADTLMTILNDVLDFSKIEAG 300

AP010947_0009: domain 1 of 1, from 524 to 593: score 72.4, E = 9.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTP++a++g+a+l+ +e++ ++ + q
AP010947_0 524 GKTEFLASLSHELRTPMNAVIGFADLIAREAE------GPVGNAQ-- 562

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++ i++++++ll+Lin++Ld r+eag
AP010947_0 563 ---------YRDFAINIRDSGQHLLELINEILDQVRAEAG 593

AP010947_0320: domain 1 of 1, from 671 to 735: score 69.1, E = 8.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHE+R PL+aI+gya+lL+ + +
AP010947_0 671 AKSRYIIGVSHEIRAPLNAISGYAQLLES----------NSTQRP-- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i+r+ae+l++Li+ lLd+s+ie+g
AP010947_0 706 ----------QDAVRVIRRSAEHLSNLIDGLLDISKIESG 735

AP010947_0306: domain 1 of 1, from 258 to 324: score 63.2, E = 4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sH+LRTPL+++r+++ lL++ +++ s+e
AP010947_0 258 TMRRFTADASHQLRTPLAVLRTHLALLRR--------YGTDSAEG-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ ++ +++rl+rL+ +lL l+r+++
AP010947_0 295 ----------RAALDDVEGAVKRLERLLVQLLALARADED 324

AP010947_0262: domain 1 of 2, from 461 to 532: score 59.0, E = 6.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt ++g +e +l ++ ++l +
AP010947_0 461 AKTAFFSNASHEFRTPLTLMLGPLEEMLHGS-------AALAGSSVS 500

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le ++r ++rllrL+n lLd+srieag
AP010947_0 501 VS--------RNELEMVHRNGQRLLRLVNALLDFSRIEAG 532

AP010947_0767: domain 1 of 1, from 262 to 327: score 58.7, E = 7.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sH+L +PL aI +++ +L++ +++s +
AP010947_0 262 AKSRFLAHASHDLQQPLQAIGMFTGMLER---------QPQSGKA-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ ++ + +++++L+ +Ld+s++e+g
AP010947_0 298 ----------AVLLSDLKAAQRSMRDLLTAILDISKLESG 327

AP010947_1037: domain 2 of 2, from 372 to 438: score 56.4, E = 3.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e +a ++HE+R+PL I++ +++L++ +++e
AP010947_1 372 ILGEAAAVIAHEIRNPLGIIKTSSQVLRM---------KSQPPEAS- 408

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +l+e+ r+++L+++lLd++r a
AP010947_1 409 ----------DRLIGFVLDEVGRMEALVQELLDYARPKAA 438

AP010947_0217: domain 1 of 1, from 324 to 389: score 53.8, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sH+LR+PL a+++++++L+ + ++++
AP010947_0 324 AKGKFLAAASHDLRQPLQALLLFVDVLKP---------HVQGSQG-- 359

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l + r ++ l +L++ lLd+sr+++g
AP010947_0 360 ----------ATALMHLGRGLDALKELLDSLLDMSRLDSG 389

AP010947_0008: domain 1 of 1, from 273 to 338: score 44.8, E = 6.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f+a++sH+LR+P ++++++ +L++ t+ +++
AP010947_0 273 SKAKFMAAASHDLRQPAQSLLMLTAMLRA---------TAPTPKV-- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++i++ + l +L+++lL+ sr++ag
AP010947_0 309 ----------AESARKIEQVVMTLKQLLDELLEVSRLDAG 338

AP010947_0583: domain 1 of 1, from 525 to 593: score 43.0, E = 2.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f ++sH+LR P + yaelL+ ++ ++l+e +
AP010947_0 525 ELAAFSYSVSHDLRAPFRHVTSYAELLRSRAA------DKLNERE-- 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl++i+++a + rL++ lL +s+++
AP010947_0 564 ----------RHYLDSIIEAASSAGRLVDGLLHFSQLGRA 593

AP010947_0309: domain 1 of 1, from 206 to 272: score 41.6, E = 5.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+fla++sH+LR+P a+r+++++L +++ e ++
AP010947_0 206 ARSRFLASASHDLRQPFQAMRLFLDALTTQV--------EGNARA-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ ++L+n lLd+s ++ag
AP010947_0 243 ----------TRTAGMLGNAMTAGEQLLNALLDISTLDAG 272

AP010947_0564: domain 1 of 1, from 436 to 504: score 40.5, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+++PL+a+r +a+ + l++++ l++
AP010947_0 436 ALGQMSAGIAHEINQPLAAMRSFADNAVV-----LLERGRLDSVR-- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i + ++r+ ++ ++l ++r +g
AP010947_0 476 -----------DNLAEIAELTDRMAAITRQLKGFARRASG 504

AP010947_0853: domain 1 of 1, from 240 to 297: score 40.0, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ fla+++H++RTPL+a+r +el+ e ++ ++
AP010947_0 240 STKTFLADMAHQIRTPLAALRSQSELASE---------ETDPARL-- 275

peLRledpeyreyletilreaerllrLindlL<-*
++++ +i+r a ++L +lL
AP010947_0 276 ----------QRIVGRIHRNAVEASELTTQLL 297

AP010947_0663: domain 1 of 1, from 364 to 429: score 38.5, E = 3.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fl+++ H+LR+P a+r++ ++L e +++ +
AP010947_0 364 AKGRFLSAANHDLRQPFQALRLFHHILME---------RLADPRD-- 399

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e++ ++++ +rL+ lL+ + ++ag
AP010947_0 400 ----------HGIAEKMGEALDAGERLLHALLEVATLDAG 429

AP010947_1067: domain 1 of 1, from 208 to 303: score 35.8, E = 2.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldk...........v.l
++++++a+++HEL++P++ + g+a+++++++++ + ++ + + +
AP010947_1 208 SLGRLVAGVAHELNNPISFVYGNAHAMRRYVERmtayldhvhagAaA 254

agdtelseeqrlpeLR..ledpeyreyletilreaerllrLindlLdlsr
a+ ++l e r++++R + + l+ +l+ +er ++++ +l+ +s
AP010947_1 255 AELAALRKELRIDRARadA-----AATLDGMLEGTERVRDIVAELRRFSS 299

ieag<-*
+
AP010947_1 300 EQKH 303

AP010947_0262: domain 2 of 2, from 1016 to 1082: score 27.3, E = 5.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +I g+++lLl+ + + +
AP010947_0 1016 AVGQLTGGVAHDFNNLLQVIGGNLQLLLN---------DVGDNARA- 1052

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +l+ + r +L + lL ++r +
AP010947_0 1053 ----------ADRVRNALSGVSRGAKLASSLLAFARRQPL 1082


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 2 0|=
-13 5 0|==
-12 33 25|======*==
-11 76 134|=================== *
-10 160 248|======================================== *
-9 219 256|======================================================= *
-8 219 192|===============================================*=======
-7 170 121|==============================*============
-6 90 69|=================*=====
-5 49 38|=========*===
-4 30 20|====*===
-3 32 10|==*=====
-2 12 5|=*=
-1 6 2|*=
0 5 1|*=
1 1 0|=
2 0 0|
3 0 0|
4 1 0|=
> 5 21 -|======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 149.5876
P(chi-square) = 4.532e-27

Total sequences searched: 1131

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: