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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

7 accessions found for Azospirillum sp. B510  

Data for AP010948  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP010948.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010948_0271 CDS_295725-292987 72.2 6.4e-21 1
AP010948_0298 CDS_331037-332623 44.6 4e-13 2
AP010948_0517 CDS_583453-581567 38.2 2.7e-11 1
AP010948_0001 CDS_3-722154 31.5 2.1e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010948_0271 1/1 664 732 .. 1 87 [] 72.2 6.4e-21
AP010948_0298 1/2 291 361 .. 1 87 [] 42.4 1.7e-12
AP010948_0517 1/1 368 436 .. 1 87 [] 38.2 2.7e-11
AP010948_0001 1/1 288 355 .. 1 87 [] 31.5 2.1e-09

Alignments of top-scoring domains:
AP010948_0271: domain 1 of 1, from 664 to 732: score 72.2, E = 6.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l++lsH+LRTPL +I+g+++ L ++ ++l +++r
AP010948_0 664 LRSALLSSLSHDLRTPLVSILGASSSLTSYG-------ETLAPPER- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ti++eaerl+r +++lLd++ri++g
AP010948_0 703 ----------MELVQTIQEEAERLNRFVQNLLDMTRIGSG 732

AP010948_0298: domain 1 of 2, from 291 to 361: score 42.4, E = 1.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE ++PL aI ++a ++l+ ++ + + +++
AP010948_0 291 MMGELAAAVAHEVNQPLMAIVTNAGTCLR-----HLSLPRPDLDKT- 331

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +e+i r+a+r + ++ ++ l+r
AP010948_0 332 ----------RVVVERIVRDAQRAGDVVRSIRALARRTPV 361

AP010948_0517: domain 1 of 1, from 368 to 436: score 38.2, E = 2.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ a+l+HEL++PL+a+r+++ ++l + + e +
AP010948_0 368 VIGQLSAGLAHELNQPLAALRTLSGNTVKFL-------QRGNLEAA- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i + ++ + +L ++l ++r +g
AP010948_0 407 ----------RGNLDRIAHLVDAMGALTSQLKSFARKSSG 436

AP010948_0001: domain 1 of 1, from 288 to 355: score 31.5, E = 2.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++++l+HEL++PLta++ ya+++++ ++ + + +++
AP010948_0 288 AMGQMASTLAHELNQPLTAVINYAKAAKRLME------RPETVAKAI 328

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++ +a r ++i+ l s ie g
AP010948_0 329 DM-----------VDKASAQATRAGQIIRHL--RSFIEKG 355


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-13 3 0|=
-12 22 14|====*===
-11 44 74|=============== *
-10 90 138|============================== *
-9 143 143|===============================================*
-8 117 107|===================================*===
-7 88 67|======================*=======
-6 51 38|============*====
-5 26 21|======*==
-4 18 11|===*==
-3 12 6|=*==
-2 4 3|*=
-1 7 1|*==
> 0 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 55.2786
P(chi-square) = 1.078e-08

Total sequences searched: 631

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: