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Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Azospirillum sp. B510  

Data for AP010949  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP010949.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010949_0147 CDS_178917-184799 85.7 7.8e-25 1
AP010949_0044 CDS_55027-56685 84.2 2.1e-24 1
AP010949_0360 CDS_438168-439778 76.0 4.3e-22 1
AP010949_0523 CDS_666794-664410 63.1 2e-18 1
AP010949_0117 CDS_146660-144945 51.0 5.3e-15 1
AP010949_0467 CDS_591848-592774 42.3 1.6e-12 1
AP010949_0126 CDS_155592-154486 34.8 2.2e-10 1
AP010949_0148 CDS_184991-187153 30.2 4.3e-09 1
AP010949_0298 CDS_369489-368230 29.9 5e-09 1
AP010949_0366 CDS_446777-444543 27.3 2.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010949_0147 1/1 1247 1315 .. 1 87 [] 85.7 7.8e-25
AP010949_0044 1/1 326 395 .. 1 87 [] 84.2 2.1e-24
AP010949_0360 1/1 323 389 .. 1 85 [. 76.0 4.3e-22
AP010949_0523 1/1 420 485 .. 1 87 [] 63.1 2e-18
AP010949_0117 1/1 326 395 .. 1 87 [] 51.0 5.3e-15
AP010949_0467 1/1 66 132 .. 1 87 [] 42.3 1.6e-12
AP010949_0126 1/1 141 205 .. 1 87 [] 34.8 2.2e-10
AP010949_0148 1/1 314 380 .. 1 87 [] 30.2 4.3e-09
AP010949_0298 1/1 174 244 .. 1 87 [] 29.9 5e-09
AP010949_0366 1/1 484 556 .. 1 87 [] 27.3 2.8e-08

Alignments of top-scoring domains:
AP010949_0147: domain 1 of 1, from 1247 to 1315: score 85.7, E = 7.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL++++ +++lL + dt+ls+ q
AP010949_0 1247 YKSQFLANMSHELRTPLNSLLILSKLLAD------NPDTNLSDRQ-- 1285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti++++ ll Lind+Ldls+ie+g
AP010949_0 1286 ----------VEFARTIHSAGSDLLGLINDILDLSKIESG 1315

AP010949_0044: domain 1 of 1, from 326 to 395: score 84.2, E = 2.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++fla +sHE+RTPL+aI+g++e+++++++ ++ +
AP010949_0 326 VNRDFLARVSHEFRTPLNAIIGFSEIIKDQMF------GPDAGPR-- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++y + i+ ++++ll Li+d+Ldlsr++ag
AP010949_0 365 ---------YADYARDIHTSGQHLLTLIDDILDLSRLQAG 395

AP010949_0360: domain 1 of 1, from 323 to 389: score 76.0, E = 4.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++sHE++TPLt+Irg++elL++ + + +++e+r
AP010949_0 323 YIRDFAAHVSHEFKTPLTTIRGTVELLRD-------HTDSMPPEER- 361

peLRledpeyreyletilreaerllrLindlLdlsrie<-*
++l +++ea rl+rL+++lL+l+r++
AP010949_0 362 ----------DRFLANMDSEAGRLSRLVRRLLELARAD 389

AP010949_0523: domain 1 of 1, from 420 to 485: score 63.1, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fla++sH+LR+P+ a++++++lLl+ + l++ +
AP010949_0 420 ARERFLAAASHDLRQPVQALLLLSDLLLK---------ESLPAGT-- 455

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e i++++ l +++ +Ld+s++eag
AP010949_0 456 ----------RRMAEQIQSSLGGLGGMLDGMLDISKLEAG 485

AP010949_0117: domain 1 of 1, from 326 to 395: score 51.0, E = 5.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++a+l+HEL++PL+a +gya ++++ a+ +++s+
AP010949_0 326 EAGEMAAALAHELNQPLAATMGYARAARK-----VARLEAASPRL-- 365

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l++ +aer +r i+ l+d+ r +ag
AP010949_0 366 ----------TEILDKTVAQAERADRVIRSLRDFVRKGAG 395

AP010949_0467: domain 1 of 1, from 66 to 132: score 42.3, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHE+RTPL+ I +++lL++ +++l+
AP010949_0 66 QQRQFVLMVSHEFRTPLAIIDSASQLLEM--------EPKLPVSA-- 102

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+++++r l+Li++ L r+++
AP010949_0 103 ----------MPRVAKIRNAVQRTLHLIERGLADDRLGTA 132

AP010949_0126: domain 1 of 1, from 141 to 205: score 34.8, E = 2.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + a+++HELRTPLt +rg ++ ++++ ++
AP010949_0 141 EMRAWHAAVAHELRTPLTILRGQLQGYVDGVF----------VPD-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++l ++e l+r+++dl l+ ++g
AP010949_0 176 ----------TPSLRSLLGQVEGLSRIVDDLKILTLVQTG 205

AP010949_0148: domain 1 of 1, from 314 to 380: score 30.2, E = 4.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L +++g +e L +l +++++
AP010949_0 314 MVGRLTGGIAHDFNNMLMVVIGSLERLAPGL--------AADSKA-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e +l++a r++++ ++lL+++r ++
AP010949_0 351 ----------ARRAEMALQAALRCSDMTRRLLTFARRQQL 380

AP010949_0298: domain 1 of 1, from 174 to 244: score 29.9, E = 5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++a+l HE +PL +I +a ++ ++l + +++ +
AP010949_0 174 LVGELAASLTHEVSQPLVSIASHAAAAARWL-------SREPPDLA- 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ l++i ++++ r + ++ ++r ++
AP010949_0 213 --------EVATSLNRITASSRHAVRVVGKMRSFARRGEL 244

AP010949_0366: domain 1 of 1, from 484 to 556: score 27.3, E = 2.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++sHE RTPL++I++ +++L + ++++ +r
AP010949_0 484 DRTQFVDMISHEYRTPLSVISASLDVLALRIG------SDMDGVDR- 523

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ l +++r+++rl ++++ L+ +ri+
AP010949_0 524 -------SGLERPLARMRRAVHRLVEIVDVGLQRARIDVD 556


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 1 0|=
-12 12 12|=====*
-11 45 63|======================= *
-10 75 117|====================================== *
-9 98 121|================================================= *
-8 112 90|============================================*===========
-7 64 57|============================*===
-6 50 32|===============*=========
-5 30 18|========*======
-4 16 9|====*===
-3 5 5|==*
-2 4 2|*=
-1 7 1|*===
0 2 0|=
> 1 12 -|======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 51.7497
P(chi-square) = 5.041e-08

Total sequences searched: 533

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: