Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Azospirillum sp. B510  

Data for AP010949  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AP010949.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010949_0522 CDS_664232-662898 58.8 1.9e-17 1
AP010949_0100 CDS_123854-124885 40.6 3e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010949_0522 1/1 245 316 .. 1 76 [. 58.8 1.9e-17
AP010949_0100 1/1 152 191 .. 1 45 [. 40.6 3e-12

Alignments of top-scoring domains:
AP010949_0522: domain 1 of 1, from 245 to 316: score 58.8, E = 1.9e-17
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E++HRVKN+LQ+++ LLr Qa k ++ +v + L +s +RVl+
AP010949_0 245 EVNHRVKNSLQIVANLLRTQALKHRSHDV-----RQELLDSSGRVLA 286

mAliHEeLYksedl.dtvdfseYlekLten<-*
+A +H++LY + ++d v++s+ ++ ++en
AP010949_0 287 IAEVHRHLYGEGAVhDMVELSDLIRSIAEN 316

AP010949_0100: domain 1 of 1, from 152 to 191: score 40.6, E = 3e-12
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRV<-
+ HR KN LQ++SSLL LQ+ +++d+ev + aL+ + +R+
AP010949_0 152 DVSHRLKNTLQLVSSLLTLQTLSSRDPEV-----RRALQSAASRI 191

*

AP010949_0 - -


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-13 5 3|*=
-12 29 35|========== *
-11 116 97|================================*======
-10 136 126|=========================================*====
-9 100 106|================================== *
-8 67 71|=======================*
-7 33 42|=========== *
-6 19 23|=======*
-5 7 12|===*
-4 8 6|=*=
-3 3 3|*
-2 3 1|*
-1 3 0|=
0 1 0|=
1 0 0|
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 11.8366
P(chi-square) = 0.1586

Total sequences searched: 533

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: