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Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Azospirillum sp. B510  

Data for AP010950  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP010950.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010950_0365 CDS_413567-415960 99.4 1e-28 1
AP010950_0183 CDS_210866-214273 93.5 4.8e-27 1
AP010950_0272 CDS_315759-318560 87.8 2e-25 1
AP010950_0229 CDS_263272-264429 82.5 6.1e-24 1
AP010950_0109 CDS_128946-126298 79.8 3.6e-23 1
AP010950_0415 CDS_484459-482111 68.0 7.8e-20 1
AP010950_0284 CDS_331544-329715 59.2 2.5e-17 1
AP010950_0165 CDS_189762-187432 43.2 8.7e-13 1
AP010950_0375 CDS_425981-427834 39.7 8.6e-12 1
AP010950_0258 CDS_298618-297209 32.3 1e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010950_0365 1/1 381 446 .. 1 87 [] 99.4 1e-28
AP010950_0183 1/1 589 654 .. 1 87 [] 93.5 4.8e-27
AP010950_0272 1/1 387 452 .. 1 87 [] 87.8 2e-25
AP010950_0229 1/1 146 215 .. 1 87 [] 82.5 6.1e-24
AP010950_0109 1/1 360 429 .. 1 87 [] 79.8 3.6e-23
AP010950_0415 1/1 257 322 .. 1 87 [] 68.0 7.8e-20
AP010950_0284 1/1 247 312 .. 1 87 [] 59.2 2.5e-17
AP010950_0165 1/1 391 456 .. 1 87 [] 43.2 8.7e-13
AP010950_0375 1/1 399 466 .. 1 87 [] 39.7 8.6e-12
AP010950_0258 1/1 220 283 .. 1 87 [] 32.3 1e-09

Alignments of top-scoring domains:
AP010950_0365: domain 1 of 1, from 381 to 446: score 99.4, E = 1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTP+++++g+ae+Lle t+l+ eq
AP010950_0 381 AKEEFLATMSHEIRTPMNGVIGFAEMLLE---------TPLTVEQ-- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y + +++++++ll ind+Ldls++eag
AP010950_0 417 ----------RRYASQVRDAGRSLLTVINDVLDLSKLEAG 446

AP010950_0183: domain 1 of 1, from 589 to 654: score 93.5, E = 4.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTP+++++g++ l + ++l++eq
AP010950_0 589 AKGEFLATMSHEIRTPMNGVLGALALVEG---------PNLNDEQ-- 624

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+++ r+++ ll++i+d+Ldls++eag
AP010950_0 625 ----------RQLLDVANRSGNALLQIIDDILDLSKLEAG 654

AP010950_0272: domain 1 of 1, from 387 to 452: score 87.8, E = 2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla++sHELRTP+++++g++ lL + + l++e+
AP010950_0 387 SKTEFLATVSHELRTPMNGVLGNLTLLAD---------ASLPAEE-- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++r+ae llrL++d+Ldls++ea
AP010950_0 423 ----------KRLADVARRSAETLLRLLDDILDLSKLEAR 452

AP010950_0229: domain 1 of 1, from 146 to 215: score 82.5, E = 6.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+ + +lsHELRTPLta++g+ae+L+++l ++ +++
AP010950_0 146 RKSDYINHLSHELRTPLTAVIGFAEILRDQL------LGPPDSPR-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e+ i +++++l+Lin+lLdl+rieag
AP010950_0 185 ---------YGEAAAQIVAAGDYMLELINNLLDLARIEAG 215

AP010950_0109: domain 1 of 1, from 360 to 429: score 79.8, E = 3.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla+lsHELRTPL+a++g+a+l+ +e++ ++ + +
AP010950_0 360 AKGEFLAGLSHELRTPLNAVIGFADLIAREAE------GPVGTPS-- 398

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+y +++++++ l+Lin++Ld +r+eag
AP010950_0 399 ---------YRQYAANVRDSGQHVLELINEILDHARAEAG 429

AP010950_0415: domain 1 of 1, from 257 to 322: score 68.0, E = 7.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+flan+sHE+RTP++a++g+a lL + l+e q
AP010950_0 257 TRSRFLANMSHEIRTPMNAVSGLARLLGQ---------SVLNERQ-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +i +a+ llrL + +L +r+eag
AP010950_0 293 ----------RIHVTRIAAAADLLLRLTDGVLSVARLEAG 322

AP010950_0284: domain 1 of 1, from 247 to 312: score 59.2, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f+a++sH+L +PL+a r+++++L + e+++
AP010950_0 247 SKTRFIAAASHDLLQPLNAARLFVSALAD---------LEQPDAN-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e i+ ++ + ++L++ lLd+s+++ag
AP010950_0 283 ----------AELVENIDVALASVEDLLSALLDISKLDAG 312

AP010950_0165: domain 1 of 1, from 391 to 456: score 43.2, E = 8.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fla++sH+LR+P+ ++ +++++L +l ++ ++ +
AP010950_0 391 SKTHFLAAASHDLRQPVQSLVLLTSALAIRL-------GDHPAASL- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+ + + l rL++ +Ld+s+++ag
AP010950_0 430 -------------VGSIEASMDALCRLLDAILDISKLDAG 456

AP010950_0375: domain 1 of 1, from 399 to 466: score 39.7, E = 8.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e + +++HEL++ L+ I+ +++ +++ d+ + +e +
AP010950_0 399 AIGEIAGGMAHELNNLLHPIINLSQQARK--------DAIAKPERL- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i+++a+ +L++++L ++r +++
AP010950_0 437 ----------GKALSIIEESARGSAQLVRQVLSFARNDEE 466

AP010950_0258: domain 1 of 1, from 220 to 283: score 32.3, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HEL PL +I a+ L + +l+++
AP010950_0 220 ALGALAAAAAHELGSPLGTIAVVAKELAR----------DLPPDSP- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e +e +++++ r+++++ dl +r +
AP010950_0 256 ---------YGEDVELLQSQVMRCREILADL---ARKPEA 283


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 1 0|=
-12 12 11|=====*
-11 39 61|==================== *
-10 91 114|============================================== *
-9 95 117|================================================ *
-8 92 88|===========================================*==
-7 71 55|===========================*========
-6 47 32|===============*========
-5 19 17|========*=
-4 14 9|====*==
-3 12 4|=*====
-2 4 2|*=
-1 7 1|*===
0 2 0|=
> 1 13 -|=======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 31.1863
P(chi-square) = 0.0001302

Total sequences searched: 519

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: