Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Azospirillum sp. B510  

Data for AP010950  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AP010950.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010950_0309 CDS_356198-356956 65.5 2.4e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010950_0309 1/1 63 132 .. 1 75 [. 65.5 2.4e-19

Alignments of top-scoring domains:
AP010950_0309: domain 1 of 1, from 63 to 132: score 65.5, E = 2.4e-19
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HR KN+LQ+++SLL LQa +++d+++ ++a + + R+ S
AP010950_0 63 ELQHRAKNSLQLVISLLKLQAGRVRDPDA-----RAAYEQTMVRIES 104

mAliHEeLYksedldtvdfseYlekLte<-*
A+++++L++s+ vd++ Y++ L+e
AP010950_0 105 LAILYRQLHESGAGTHVDLGRYVTALCE 132


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 3 0|=
-13 4 3|*=
-12 29 34|========== *
-11 135 94|===============================*=============
-10 121 122|========================================*
-9 79 103|=========================== *
-8 68 69|======================*
-7 29 41|========== *
-6 23 23|=======*
-5 11 12|===*
-4 10 6|=*==
-3 2 3|*
-2 1 1|*
-1 1 0|=
0 0 0|
1 0 0|
2 1 0|=
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 29.2827
P(chi-square) = 0.0002828

Total sequences searched: 519

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: