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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Azospirillum sp. B510  

Data for AP010951  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP010951.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010951_0380 CDS_489500-485568 100.8 3.2e-29 1
AP010951_0200 CDS_252087-253433 85.8 5.8e-25 1
AP010951_0371 CDS_473190-469663 81.2 1.2e-23 1
AP010951_0058 CDS_86582-91216 52.7 1.4e-15 1
AP010951_0374 CDS_476406-479924 50.0 8e-15 1
AP010951_0259 CDS_327423-326344 45.4 1.6e-13 1
AP010951_0296 CDS_368530-370338 39.1 9.7e-12 1
AP010951_0393 CDS_506054-507910 38.5 1.4e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010951_0380 1/1 628 693 .. 1 87 [] 100.8 3.2e-29
AP010951_0200 1/1 217 286 .. 1 87 [] 85.8 5.8e-25
AP010951_0371 1/1 659 724 .. 1 87 [] 81.2 1.2e-23
AP010951_0058 1/1 1178 1243 .. 1 87 [] 52.7 1.4e-15
AP010951_0374 1/1 809 870 .. 1 87 [] 50.0 8e-15
AP010951_0259 1/1 135 199 .. 1 87 [] 45.4 1.6e-13
AP010951_0296 1/1 383 451 .. 1 87 [] 39.1 9.7e-12
AP010951_0393 1/1 371 438 .. 1 87 [] 38.5 1.4e-11

Alignments of top-scoring domains:
AP010951_0380: domain 1 of 1, from 628 to 693: score 100.8, E = 3.2e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP+++I+g++elL + t+l+eeq
AP010951_0 628 AKSEFLAAMSHEIRTPMNGIMGMTELLFD---------TPLTEEQ-- 663

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + i+++++ ll +ind+Ld+s++eag
AP010951_0 664 ----------RQFAQAIRSSSNALLTIINDILDISKLEAG 693

AP010951_0200: domain 1 of 1, from 217 to 286: score 85.8, E = 5.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++++++ + ++l+ ++
AP010951_0 217 AKSEFLANMSHELRTPLNAIIGFSSMMES------EIVGPLGHPK-- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y +y ++i +++++ll+ i+d+Ld ++ieag
AP010951_0 256 ---------YLDYAKVIGKSGQHLLAVISDILDVAKIEAG 286

AP010951_0371: domain 1 of 1, from 659 to 724: score 81.2, E = 1.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTPL++I+g++ lLl+ + l + +
AP010951_0 659 AKTEFLATVSHEMRTPLNGILGLCRLLLT---------GRLESGE-- 694

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y +i r+++ ll+++nd+Ldl +ie g
AP010951_0 695 ----------RRYAMSIMRCGHGLLDQVNDILDLRKIEDG 724

AP010951_0058: domain 1 of 1, from 1178 to 1243: score 52.7, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+LR+P+ a++++ +l + ++++e
AP010951_0 1178 SKTRFLAAASHDLRQPVQALLMFHHLVAM---------QPQGEAA-- 1213

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ +++ + ++++d+Ld sr++ag
AP010951_0 1214 ----------AKLLVSMGNALGAMTAMLDDILDVSRLDAG 1243

AP010951_0374: domain 1 of 1, from 809 to 870: score 50.0, E = 8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla++sH+L +PL+a r+++++L e ++ + +
AP010951_0 809 GKTRFLAAASHDLLQPLHAARLFLSALAE-----------RNGDSA- 843

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+ ++++ + ++ dlLd s+i++g
AP010951_0 844 -------------IRQIDASLRSVETILGDLLDVSKIDSG 870

AP010951_0259: domain 1 of 1, from 135 to 199: score 45.4, E = 1.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + a+++HELRTP+t +rg ++ L e+l+ + +e q
AP010951_0 135 EQRFWNAAIAHELRTPVTILRGRLQGLAEGLF-------TPDETQ-- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l ++e l rLi+dl+ +s +e+
AP010951_0 173 -------------FRSLLTQVEGLARLIEDLRVISLAESR 199

AP010951_0296: domain 1 of 1, from 383 to 451: score 39.1, E = 9.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+l+HE+++PL+aIr+++ + +e++e
AP010951_0 383 ALGQMSAALAHEINQPLAAIRTFVASTRL--------LAERGETA-- 419

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++r+ l i + aer+ +L l +++r +
AP010951_0 420 --------MVRDNLAMIGDLAERMAQLSGHLKEFARKGPA 451

AP010951_0393: domain 1 of 1, from 371 to 438: score 38.5, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ fl++++HE++TPL+ I g+a++Ll d+e ++ +l
AP010951_0 371 ALKGFLSMAAHEFKTPLAIIDGAAQILLL--------DAEGKAPAML 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+ le+i+r+++r ++++ L r+ +
AP010951_0 410 PR-----------LEKIRRAVRRQVNILDTCLADDRLNDP 438


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 5 0|===
-12 4 9|== *
-11 43 49|====================== *
-10 61 91|=============================== *
-9 73 94|===================================== *
-8 76 70|==================================*===
-7 60 44|=====================*========
-6 33 25|============*====
-5 21 14|======*====
-4 10 7|===*=
-3 13 3|=*=====
-2 2 2|*
> -1 14 -|=======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 27.8638
P(chi-square) = 0.0002327

Total sequences searched: 415

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: