Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Azospirillum sp. B510  

Data for AP010951  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AP010951.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010951_0232 CDS_292663-294558 113.2 5.3e-33 1
AP010951_0052 CDS_81788-80571 82.6 2.6e-24 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010951_0232 1/1 425 508 .. 1 94 [] 113.2 5.3e-33
AP010951_0052 1/1 213 298 .. 1 94 [] 82.6 2.6e-24

Alignments of top-scoring domains:
AP010951_0232: domain 1 of 1, from 425 to 508: score 113.2, E = 5.3e-33
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E++HRVKN+LQ++SSLL LQ+ + de v + +++++++R+ +
AP010951_0 425 EVNHRVKNSLQLVSSLLTLQTLSLPDEGV-----RVHFQDARSRIEA 466

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +H++LY+ + + t++f+ Yl++L+e+L ++ g++s +D+
AP010951_0 467 IARVHNRLYQADQFQTIEFGTYLNELCEDLGRASGGDSM-----CDI 508

AP010951_0052: domain 1 of 1, from 213 to 298: score 82.6, E = 2.6e-24
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E++HRVKN LQ+ SS Lr+Q + + ++e V+eaL+ ++ R
AP010951_0 213 EVNHRVKNTLQMASSFLRIQLDLTHGREP---AVQEALHSAVERLDR 256

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
mA iHE LY++ +l ++f+ Yl+ L+++L+ s++ + L+ +
AP010951_0 257 MAEIHETLYRTQGLQEIEFGGYLRMLCRDLLMSFEPAQS---LR--V 298


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 1 0|=
-13 10 2|*====
-12 19 27|========== *
-11 102 75|=====================================*=============
-10 84 98|========================================== *
-9 73 82|===================================== *
-8 63 55|===========================*====
-7 27 33|============== *
-6 20 18|========*=
-5 3 9|== *
-4 3 5|==*
-3 3 2|*=
-2 3 1|*=
-1 0 0|
> 0 4 -|==


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 16.9456
P(chi-square) = 0.009485

Total sequences searched: 415

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: