Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

6 accessions found for Escherichia coli O111:H- str. 11128  

Data for AP010960  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP010960.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP010960_3511 CDS_3483000-3485756 100.1 6.4e-28 1
AP010960_0429 CDS_457609-458904 91.0 2.5e-25 1
AP010960_3106 CDS_3054167-3057760 81.6 1.1e-22 1
AP010960_1104 CDS_1172133-1169389 80.7 2e-22 1
AP010960_2955 CDS_2896210-2893409 80.6 2.2e-22 1
AP010960_4035 CDS_4021983-4019647 78.9 6.8e-22 1
AP010960_3282 CDS_3251662-3250235 75.4 6.6e-21 1
AP010960_2798 CDS_2731982-2733385 69.8 2.6e-19 1
AP010960_4735 CDS_4787070-4785697 66.6 2e-18 1
AP010960_5260 CDS_5366122-5367546 62.4 3.1e-17 1
AP010960_4820 CDS_4889123-4890499 61.5 5.7e-17 1
AP010960_0597 CDS_641972-640524 61.0 7.9e-17 1
AP010960_4689 CDS_4736009-4734960 59.7 1.9e-16 1
AP010960_3849 CDS_3832451-3833800 59.6 1.9e-16 1
AP010960_0713 CDS_769615-766931 59.6 1.9e-16 1
AP010960_4213 CDS_4191661-4190309 55.0 3.9e-15 1
AP010960_2547 CDS_2530111-2528753 52.3 2.2e-14 1
AP010960_4982 CDS_5065377-5064286 45.0 2.7e-12 1
AP010960_2078 CDS_2078993-2080294 42.4 1.5e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP010960_3511 1/1 292 357 .. 1 87 [] 100.1 6.4e-28
AP010960_0429 1/1 203 269 .. 1 87 [] 91.0 2.5e-25
AP010960_3106 1/1 711 777 .. 1 87 [] 81.6 1.1e-22
AP010960_1104 1/1 443 508 .. 1 87 [] 80.7 2e-22
AP010960_2955 1/1 453 518 .. 1 87 [] 80.6 2.2e-22
AP010960_4035 1/1 282 347 .. 1 87 [] 78.9 6.8e-22
AP010960_3282 1/1 249 317 .. 1 87 [] 75.4 6.6e-21
AP010960_2798 1/1 240 304 .. 1 87 [] 69.8 2.6e-19
AP010960_4735 1/1 238 300 .. 1 87 [] 66.6 2e-18
AP010960_5260 1/1 255 320 .. 1 87 [] 62.4 3.1e-17
AP010960_4820 1/1 237 303 .. 1 87 [] 61.5 5.7e-17
AP010960_0597 1/1 261 327 .. 1 87 [] 61.0 7.9e-17
AP010960_4689 1/1 129 186 .. 1 79 [. 59.7 1.9e-16
AP010960_3849 1/1 236 302 .. 1 87 [] 59.6 1.9e-16
AP010960_0713 1/1 663 730 .. 1 87 [] 59.6 1.9e-16
AP010960_4213 1/1 233 293 .. 1 87 [] 55.0 3.9e-15
AP010960_2547 1/1 235 301 .. 1 87 [] 52.3 2.2e-14
AP010960_4982 1/1 142 202 .. 1 87 [] 45.0 2.7e-12
AP010960_2078 1/1 211 271 .. 1 87 [] 42.4 1.5e-11

Alignments of top-scoring domains:
AP010960_3511: domain 1 of 1, from 292 to 357: score 100.1, E = 6.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
AP010960_3 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELTPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
AP010960_3 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

AP010960_0429: domain 1 of 1, from 203 to 269: score 91.0, E = 2.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ e ++l r
AP010960_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMDE---------QPLEGAVR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t++++++r++ L+ +lL+ls+iea
AP010960_0 240 ----------EKALHTMREQTQRMEGLVKQLLTLSKIEAA 269

AP010960_3106: domain 1 of 1, from 711 to 777: score 81.6, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++I+g++elL + ls eqr
AP010960_3 711 AKSQFLATMSHEIRTPISSIMGFLELLSG---------SGLSKEQR- 747

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ ++ +++ll Li ++Ld +ie+g
AP010960_3 748 ----------VEAISLAYATGQSLLGLIGEILDVDKIESG 777

AP010960_1104: domain 1 of 1, from 443 to 508: score 80.7, E = 2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+a+lL + ++ q
AP010960_1 443 AKSAFLAAMSHEIRTPLYGILGTAQLLAD---------NPALNAQ-- 478

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll ++nd+Ld+s ieag
AP010960_1 479 ----------RDDLRAITDSGESLLTILNDILDYSAIEAG 508

AP010960_2955: domain 1 of 1, from 453 to 518: score 80.6, E = 2.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
AP010960_2 453 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
AP010960_2 489 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 518

AP010960_4035: domain 1 of 1, from 282 to 347: score 78.9, E = 6.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
AP010960_4 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
AP010960_4 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

AP010960_3282: domain 1 of 1, from 249 to 317: score 75.4, E = 6.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
AP010960_3 249 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r +a
AP010960_3 288 ----------KEVVSILDSSSRNLQKLIEQLLDYNRKQAD 317

AP010960_2798: domain 1 of 1, from 240 to 304: score 69.8, E = 2.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ + ++e+
AP010960_2 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RKFTPET-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
AP010960_2 278 -------------VASLQAEVGTLTKLVDDLHQLSMSDEG 304

AP010960_4735: domain 1 of 1, from 238 to 300: score 66.6, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
AP010960_4 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
AP010960_4 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

AP010960_5260: domain 1 of 1, from 255 to 320: score 62.4, E = 3.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+ae+L+e ++ +e
AP010960_5 255 YIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPPEVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ il + r+++L++ lL +r+e+
AP010960_5 291 ----------ARFTDNILTQNARMQALVETLLRQARLENR 320

AP010960_4820: domain 1 of 1, from 237 to 303: score 61.5, E = 5.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +++++ e
AP010960_4 237 ALGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RAPAGGEA-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ +ea+rl+r +++lL+l + +
AP010960_4 274 ----------HQLAQVMAKEADRLNRVVSELLELVKPTHL 303

AP010960_0597: domain 1 of 1, from 261 to 327: score 61.0, E = 7.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HE+RTP+t +++ +e++l + +s +++
AP010960_0 261 RQSNFSADIAHEIRTPITNLITQTEIALS---------QSRSQKEL- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e+ r+ ++++d+L l++++++
AP010960_0 298 ----------EDVLYSNLEELTRMAKMVSDMLFLAQADNN 327

AP010960_4689: domain 1 of 1, from 129 to 186: score 59.7, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
AP010960_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPSL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
AP010960_4 165 ----------LEYTKVIIEQADRLRNLVDRLL 186

AP010960_3849: domain 1 of 1, from 236 to 302: score 59.6, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PLta++ +e+++ ++ +++ r
AP010960_3 236 RERRFTSDAAHELRSPLTALKVQTEVAQL---------SDDDPQAR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ ++r rL+++lL+lsr+++
AP010960_3 273 ----------KKALLQLHYGIDRATRLVDQLLTLSRLDSL 302

AP010960_0713: domain 1 of 1, from 663 to 730: score 59.6, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + ++++
AP010960_0 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASEGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
AP010960_0 701 ----------ARQASEIRQHVLNTTRLVNNLLDMARIQSG 730

AP010960_4213: domain 1 of 1, from 233 to 293: score 55.0, E = 3.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
AP010960_4 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
AP010960_4 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

AP010960_2547: domain 1 of 1, from 235 to 301: score 52.3, E = 2.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+ +l+HELRTP++a++g ++ l +++s +
AP010960_2 235 RLSQFADDLAHELRTPINALLGQNQVTLS---------QTRSIAE-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ + ++e+e ++rL +++L l+r++ +
AP010960_2 271 ---------YQKTIAGNIEELENISRLTENILFLARADKN 301

AP010960_4982: domain 1 of 1, from 142 to 202: score 45.0, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
AP010960_4 142 NERLFTADVAHELRTPLAGVRLHLELLAK---------TH------- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++++ + +++lL+l+r+++
AP010960_4 173 ----------HIDVAPLVARLDQMMESVSQLLQLARAGQS 202

AP010960_2078: domain 1 of 1, from 211 to 271: score 42.4, E = 1.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + ls+ +
AP010960_2 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LSAAE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
AP010960_2 245 -------------SQALNRDISQLEALIEELLTYARLDRP 271


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-16 1 0|=
-15 6 0|=
-14 21 0|==
-13 83 3|*=====
-12 268 113|=======*=========
-11 517 589|================================= *
-10 838 1093|===================================================== *
-9 928 1129|==========================================================*
-8 820 845|====================================================*
-7 611 532|=================================*=====
-6 366 306|===================*===
-5 217 168|==========*===
-4 117 90|=====*==
-3 55 47|==*=
-2 31 24|=*
-1 33 13|*==
0 19 6|*=
1 7 3|*
2 11 1|*
3 2 0|=
4 0 0|
> 5 21 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 415.0827
P(chi-square) = 0

Total sequences searched: 5264

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: