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Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

1 accessions found for Hydrogenobacter thermophilus TK-6  

Data for AP011112  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP011112.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP011112_1073 CDS_989012-990001 74.0 5.7e-21 1
AP011112_1419 CDS_1310517-1311839 51.0 1.9e-14 1
AP011112_0467 CDS_464088-465848 39.0 4.7e-11 1
AP011112_0959 CDS_889377-890402 36.0 3.5e-10 1
AP011112_0822 CDS_768205-766301 31.7 5.5e-09 1
AP011112_1668 CDS_1536763-1535615 26.9 1.3e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP011112_1073 1/1 107 172 .. 1 87 [] 74.0 5.7e-21
AP011112_1419 1/1 226 293 .. 1 87 [] 51.0 1.9e-14
AP011112_0467 1/1 385 450 .. 1 82 [. 39.0 4.7e-11
AP011112_0959 1/1 130 192 .. 1 87 [] 36.0 3.5e-10
AP011112_0822 1/1 420 485 .. 1 87 [] 31.7 5.5e-09
AP011112_1668 1/1 183 242 .. 1 87 [] 26.9 1.3e-07

Alignments of top-scoring domains:
AP011112_1073: domain 1 of 1, from 107 to 172: score 74.0, E = 5.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ef+an+sHEL+TP++ I+ +e++ e +e++e +
AP011112_1 107 SKKEFVANVSHELKTPIAIIKSILETIIE---------EEKDEGK-- 142

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++le++l+ +e l+++++dlL ++++e+g
AP011112_1 143 ----------RRLLERALKRTEDLRNIVEDLLIITKLESG 172

AP011112_1419: domain 1 of 1, from 226 to 293: score 51.0, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++HEL+TPLt I+g ++l+ + s e++l
AP011112_1 226 WQRDFIAAMAHELKTPLTYIKGQLDLISI---------GVYSNETKL 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++++ ++ ++rLin l l r+e+g
AP011112_1 264 ----------KEVIKKMSTQVGKMERLINHLVLLMRLESG 293

AP011112_0467: domain 1 of 1, from 385 to 450: score 39.0, E = 4.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++HE+++PLt I++++e l+ l++ ++ls e++
AP011112_0 385 TWQYAVKRIAHEIKNPLTPISLNLERVLR-----LLEKEPLSKEKI- 425

peLRledpeyreyletilreaerllrLindlLdls<-*
e ++++l+e+ r+++ in ++dls
AP011112_0 426 ----------TESIRVVLEEIARIRDTINKFRDLS 450

AP011112_0959: domain 1 of 1, from 130 to 192: score 36.0, E = 3.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s+++ +++H+++TPL+ I + a++L++ + e+
AP011112_0 130 SISQLALGVAHQINTPLNIIYTCAQMLER---------ESGEKEE-- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i++++ + + in lL + r +
AP011112_0 166 -------------IVKIKEAVCACKDYINKLLLMVRNSKE 192

AP011112_0822: domain 1 of 1, from 420 to 485: score 31.7, E = 5.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e + +++H+L++PL++I+++ae + + +s++qrl
AP011112_0 420 VAGEIACSIAHQLNNPLASILTHAEYIHN-----------ASSDQRL 455

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++i+++a + +++lLdl+r+ g
AP011112_0 456 ----------KEKAQVIIKQALKSAETVRRLLDLARAFDG 485

AP011112_1668: domain 1 of 1, from 183 to 242: score 26.9, E = 1.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + +lsHE++TPL+ I+++a +++
AP011112_1 183 ELKKVALYLSHEIKTPLSIILMNAPYVQAD----------------- 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + i+r+++r+ +L +l ls ++
AP011112_1 213 ----------NEIKNAIERAIRRIIKLTKNLKVLSDMDLK 242


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 10 0|==
-13 37 1|*=====
-12 98 43|======*=======
-11 217 224|===============================*
-10 360 416|==================================================== *
-9 318 430|============================================== *
-8 299 322|=========================================== *
-7 208 202|============================*=
-6 135 116|================*===
-5 88 64|=========*===
-4 42 34|====*=
-3 31 18|==*==
-2 15 9|=*=
-1 9 4|*=
0 12 2|*=
1 5 1|*
2 1 0|=
> 3 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 133.9179
P(chi-square) = 7.404e-24

Total sequences searched: 1894

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: