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Classification of phyla is from NCBI page
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106 projects found  

6 accessions found for Rhodococcus opacus B4  

Data for AP011115  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP011115.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP011115_4834 CDS_5209613-5211079 80.2 3.8e-22 1
AP011115_0952 CDS_995170-992618 67.3 1.8e-18 1
AP011115_6386 CDS_6991423-6993195 66.2 3.6e-18 1
AP011115_1741 CDS_1846872-1845664 65.9 4.4e-18 1
AP011115_5116 CDS_5531118-5532113 60.2 1.8e-16 1
AP011115_5686 CDS_6215908-6217323 57.3 1.2e-15 1
AP011115_3148 CDS_3385841-3387286 52.3 3.1e-14 1
AP011115_5060 CDS_5468353-5467013 49.4 2.1e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP011115_4834 1/1 267 331 .. 1 87 [] 80.2 3.8e-22
AP011115_0952 1/1 622 690 .. 1 87 [] 67.3 1.8e-18
AP011115_6386 1/1 297 364 .. 1 87 [] 66.2 3.6e-18
AP011115_1741 1/1 153 219 .. 1 87 [] 65.9 4.4e-18
AP011115_5116 1/1 120 184 .. 1 87 [] 60.2 1.8e-16
AP011115_5686 1/1 245 317 .. 1 87 [] 57.3 1.2e-15
AP011115_3148 1/1 250 314 .. 1 87 [] 52.3 3.1e-14
AP011115_5060 1/1 221 287 .. 1 87 [] 49.4 2.1e-13

Alignments of top-scoring domains:
AP011115_4834: domain 1 of 1, from 267 to 331: score 80.2, E = 3.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPLt+Irg+ael + +++++ +
AP011115_4 267 KMRRFVADASHELRTPLTTIRGFAELYRQ---------GAMTDTE-- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i+ ea r+ L++dlL l+r++a+
AP011115_4 303 -----------TLMNRIEGEASRMGLLVEDLLMLARLDAQ 331

AP011115_0952: domain 1 of 1, from 622 to 690: score 67.3, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL+a++++a+ L+ d + s+e++
AP011115_0 622 LRRSLLSAVSHDLRTPLAAVKAAASSLRS-------DDVAFSPEDT- 660

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ti+++a+ l +L+ +lLd sr+ ag
AP011115_0 661 ----------AELLATIEESADVLTSLVGNLLDSSRLAAG 690

AP011115_6386: domain 1 of 1, from 297 to 364: score 66.2, E = 3.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTPLt++r++a+l+ +++ ++l++
AP011115_6 297 LQKRFTSDVSHELRTPLTTVRMAADLIHDGS-------DDLDPVL-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e + e++r + L+ dlL++sr +ag
AP011115_6 335 ----------RRSSELLVAELDRFEGLLADLLEISRHDAG 364

AP011115_1741: domain 1 of 1, from 153 to 219: score 65.9, E = 4.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a+ ++ae+Lle ++ ++e +
AP011115_1 153 TRRDFVANVSHELKTPVGAMGLLAEALLE---------SADDPESV- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e++l e+ rl +++ +l lsr++
AP011115_1 190 ----------RHFGERVLGESVRLGKMVTELIALSRLQGA 219

AP011115_5116: domain 1 of 1, from 120 to 184: score 60.2, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ n+sHELRTP++a+++++e +++ +e ++ +
AP011115_5 120 YRRELIGNVSHELRTPISALQALLENVVDGV-------EEPDPARM- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++erl rL+ +lLdlsr e g
AP011115_5 159 --------------RVALDQTERLGRLVAELLDLSRVEGG 184

AP011115_5686: domain 1 of 1, from 245 to 317: score 57.3, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+++a++ HELRTPLt++r++ elL + + +g ++ ++e++
AP011115_5 245 RQSRLVADAGHELRTPLTSLRTNMELLIASSR---PGAPHIPDEDM- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + ++e l++L+ dl dl+r +a+
AP011115_5 288 ----------AELRTDVVAQIEELSQLVGDLVDLAREDAP 317

AP011115_3148: domain 1 of 1, from 250 to 314: score 52.3, E = 3.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+ +H+LR+PL+a+++ ++lL + ++
AP011115_3 250 VQQRLIADTAHQLRNPLAALQFRLDLLDD----------GIPDSA-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +++ +ea+rl+++++ lL l+ +e++
AP011115_3 285 ----------REDYHSVTEEARRLQSILDSLLSLASAETP 314

AP011115_5060: domain 1 of 1, from 221 to 287: score 49.4, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a +HELRTPLta+r+ +e+L + +l++eq+
AP011115_5 221 TARDFAAVSAHELRTPLTAMRTDLEVLAT---------LDLTPEQQ- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ + r+ +r ++ ++dl l+r e
AP011115_5 258 ----------HEIFRDLARSQDRVESTLSDLERLARGELS 287


Histogram of all scores:
score obs exp (one = represents 25 sequences)
----- --- ---
-15 1 0|=
-14 9 0|=
-13 60 5|*==
-12 292 165|======*=====
-11 681 859|============================ *
-10 1290 1594|==================================================== *
-9 1450 1646|==========================================================*
-8 1300 1233|=================================================*==
-7 914 777|===============================*=====
-6 555 447|=================*=====
-5 293 245|=========*==
-4 197 131|=====*==
-3 97 69|==*=
-2 45 36|=*
-1 23 19|*
0 16 9|*
1 11 5|*
2 3 2|*
3 1 1|*
> 4 14 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 882.1867
P(chi-square) = 0

Total sequences searched: 7252

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: