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Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

6 accessions found for Rhodococcus opacus B4  

Data for AP011115  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AP011115.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP011115_6405 CDS_7011809-7013311 123.7 9.5e-35 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP011115_6405 1/1 301 383 .. 1 94 [] 123.7 9.5e-35

Alignments of top-scoring domains:
AP011115_6405: domain 1 of 1, from 301 to 383: score 123.7, E = 9.5e-35
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar++ +ee+ + aL Es++RV S
AP011115_6 301 EIHHRVKNNLQTVAALLRLQARRTNNEEA-----RQALSESVRRVTS 342

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+H+ L++s d + v+++e++++L+ L + ++v+ +k +
AP011115_6 343 IALVHDTLSMSVD-EEVNLDEVVDRLVPILSDVATVSTP---IK--V 383


Histogram of all scores:
score obs exp (one = represents 37 sequences)
----- --- ---
-15 4 0|=
-14 36 0|=
-13 105 45|=*=
-12 433 476|============*
-11 2140 1326|===================================*======================
-10 1688 1716|==============================================*
-9 1071 1449|============================= *
-8 845 972|======================= *
-7 382 577|=========== *
-6 308 321|========*
-5 109 173|=== *
-4 53 91|==*
-3 41 48|=*
-2 15 25|*
-1 13 13|*
0 5 6|*
1 1 3|*
2 1 1|*
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 810.0992
P(chi-square) = 0

Total sequences searched: 7252

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: