Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Acetobacter pasteurianus IFO 3283-03  

Data for AP011128  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AP011128.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP011128_1253 CDS_1327354-1325672 97.8 8.1e-28 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP011128_1253 1/1 360 430 .. 1 76 [. 97.8 8.1e-28

Alignments of top-scoring domains:
AP011128_1253: domain 1 of 1, from 360 to 430: score 97.8, E = 8.1e-28
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ+++SLL+LQa +++ +ev ++ + +++R+++
AP011128_1 360 EVHHRVKNNLQIVASLLNLQANQIEHPEV-----RAEFALARDRIRA 401

mAliHEeLYksedldtvdfseYlekLten<-*
A++H+ LY + l +++++ +l++L+e+
AP011128_1 402 LATLHRTLYAEDALNSLNMAVFLQELCEQ 430


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 6 0|=
-14 17 0|==
-13 38 16|=*=
-12 166 172|=============*
-11 731 480|====================================*====================
-10 612 621|===============================================*
-9 396 525|=============================== *
-8 316 352|========================= *
-7 146 209|============ *
-6 113 116|========*
-5 41 62|====*
-4 22 33|==*
-3 9 17|=*
-2 7 9|*
-1 3 4|*
0 2 2|*
1 0 1|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 229.9252
P(chi-square) = 8.329e-313

Total sequences searched: 2627

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: