Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Acetobacter pasteurianus IFO 3283-01-42C  

Data for AP011164  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP011164.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP011164_0053 CDS_57881-60568 78.7 2.6e-23 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP011164_0053 1/1 667 735 .. 1 87 [] 78.7 2.6e-23

Alignments of top-scoring domains:
AP011164_0053: domain 1 of 1, from 667 to 735: score 78.7, E = 2.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sH+LRTPL++I+g+++ L+ ++ +el+e r
AP011164_0 667 LRGALLTSISHDLRTPLASILGATSSLESYG-------EELDENAR- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+ti++ea+rl+r + +lLd++r+eag
AP011164_0 706 ----------KELLSTIHDEADRLNRFVANLLDMTRLEAG 735


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 2 0|==
-12 9 4|===*=====
-11 28 21|====================*=======
-10 18 39|================== *
-9 36 40|==================================== *
-8 23 30|======================= *
-7 36 19|==================*=================
-6 12 10|=========*==
-5 5 6|=====*
-4 4 3|==*=
-3 0 1|*
> -2 5 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 31.1926
P(chi-square) = 2.329e-05

Total sequences searched: 178

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: