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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Shewanella violacea DSS12  

Data for AP011177  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP011177.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP011177_0354 CDS_422050-425757 100.8 3.4e-28 1
AP011177_3181 CDS_3605314-3608109 95.7 9.8e-27 1
AP011177_1329 CDS_1527555-1532015 87.8 1.6e-24 1
AP011177_2262 CDS_2587837-2590638 83.9 2.1e-23 1
AP011177_1515 CDS_1733956-1737600 82.4 5.6e-23 2
AP011177_1151 CDS_1344928-1346235 71.6 6.3e-20 1
AP011177_3255 CDS_3689709-3686650 71.3 7.8e-20 1
AP011177_4122 CDS_4722289-4723401 60.8 7.5e-17 1
AP011177_3908 CDS_4478312-4479778 57.5 6.2e-16 1
AP011177_0406 CDS_476295-475006 57.2 7.5e-16 1
AP011177_1837 CDS_2113175-2111070 53.8 6.9e-15 1
AP011177_1429 CDS_1638189-1639298 53.4 8.9e-15 1
AP011177_0243 CDS_285046-283664 51.7 2.8e-14 1
AP011177_0160 CDS_190907-189597 49.2 1.4e-13 1
AP011177_0807 CDS_943151-941874 48.3 2.6e-13 1
AP011177_0979 CDS_1143542-1145578 48.1 3e-13 1
AP011177_1800 CDS_2067874-2069568 46.9 6.4e-13 1
AP011177_4238 CDS_4841488-4840169 28.5 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP011177_0354 1/1 721 786 .. 1 87 [] 100.8 3.4e-28
AP011177_3181 1/1 295 360 .. 1 87 [] 95.7 9.8e-27
AP011177_1329 1/1 698 763 .. 1 87 [] 87.8 1.6e-24
AP011177_2262 1/1 404 469 .. 1 87 [] 83.9 2.1e-23
AP011177_1515 2/2 529 594 .. 1 87 [] 81.8 8.2e-23
AP011177_1151 1/1 205 271 .. 1 87 [] 71.6 6.3e-20
AP011177_3255 1/1 499 564 .. 1 87 [] 71.3 7.8e-20
AP011177_4122 1/1 149 214 .. 1 87 [] 60.8 7.5e-17
AP011177_3908 1/1 262 327 .. 1 87 [] 57.5 6.2e-16
AP011177_0406 1/1 224 289 .. 1 87 [] 57.2 7.5e-16
AP011177_1837 1/1 466 531 .. 1 87 [] 53.8 6.9e-15
AP011177_1429 1/1 136 202 .. 1 87 [] 53.4 8.9e-15
AP011177_0243 1/1 244 306 .. 1 87 [] 51.7 2.8e-14
AP011177_0160 1/1 231 291 .. 1 87 [] 49.2 1.4e-13
AP011177_0807 1/1 200 269 .. 1 87 [] 48.3 2.6e-13
AP011177_0979 1/1 302 367 .. 1 87 [] 48.1 3e-13
AP011177_1800 1/1 204 270 .. 1 87 [] 46.9 6.4e-13
AP011177_4238 1/1 229 293 .. 1 87 [] 28.5 1.1e-07

Alignments of top-scoring domains:
AP011177_0354: domain 1 of 1, from 721 to 786: score 100.8, E = 3.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHE+RTP++aI+g+++l+++ tel+++q
AP011177_0 721 SKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TELTAKQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ +a++llr+ind+Ld+s+ieag
AP011177_0 757 ----------EDYLDKAGFSAQSLLRIINDILDFSKIEAG 786

AP011177_3181: domain 1 of 1, from 295 to 360: score 95.7, E = 9.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a+ Ll+ t+l + q
AP011177_3 295 IKSEFLANMSHELRTPLNGVIGFAKQLLK---------TPLHSSQ-- 330

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ti+++a ll +ind+Ld+s++eag
AP011177_3 331 ----------QDYVNTIEKSATNLLGIINDILDFSKLEAG 360

AP011177_1329: domain 1 of 1, from 698 to 763: score 87.8, E = 1.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP+++++g++ lL + ++l+e q
AP011177_1 698 AKSEFLASMSHEIRTPMNGVIGMLGLLSN---------SKLTEYQ-- 733

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++a++ll+Lind+Ld+s+i+ag
AP011177_1 734 ----------NRRVSIAQSSAQSLLSLINDILDYSKIDAG 763

AP011177_2262: domain 1 of 1, from 404 to 469: score 83.9, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kse l ++sHE+RTPL++I+g +elL++ t l+++q
AP011177_2 404 RKSEHLTDISHEIRTPLNGILGSLELLRN---------TQLDAKQ-- 439

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +t+ ++a +ll++in+lLd+sriea
AP011177_2 440 ----------ADLGDTAFHCASSLLAIINNLLDFSRIEAD 469

AP011177_1515: domain 2 of 2, from 529 to 594: score 81.8, E = 8.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+R PL+a++g +el+l+ ++l+ +q
AP011177_1 529 AKSRFLATMSHEIRSPLNAVLGGVELMLD---------SKLNKDQ-- 564

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y +t+++++ ll+ ind+Ld+s+ieag
AP011177_1 565 ----------RIYAHTAKEAGTALLSTINDILDFSKIEAG 594

AP011177_1151: domain 1 of 1, from 205 to 271: score 71.6, E = 6.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHEL+TPLt+++gy+e++++ + + +
AP011177_1 205 MRKDFVANVSHELKTPLTVLQGYLEMMQA---------MAEPGSPN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e ++++++r+++++++lL lsrie
AP011177_1 242 ----------IKAMEQMQQQTNRMRSMVEQLLVLSRIEDS 271

AP011177_3255: domain 1 of 1, from 499 to 564: score 71.3, E = 7.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++++g++ lL ++l+ q
AP011177_3 499 AKSLFLATMSHEIRTPLNGLLGTLTLLGH---------SDLPLAQ-- 534

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ +nd+Ld+sr+e+g
AP011177_3 535 ----------KQMLALSQYSGTLLQTVLNDILDFSRLEQG 564

AP011177_4122: domain 1 of 1, from 149 to 214: score 60.8, E = 7.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el ++++
AP011177_4 149 AAQYLVRNLAHEIKNPLGGLRGAAQLLSR----------ELHDPEL- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ i+++a+rl++L+++lL + +
AP011177_4 185 ----------HEFTDMIIEQADRLRNLVDRLLGPQKPTQH 214

AP011177_3908: domain 1 of 1, from 262 to 327: score 57.5, E = 6.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+ +lsH+L+TPLt+++gy+++ l ++ e
AP011177_3 262 ARHDFMLHLSHDLKTPLTSLQGYIDTWLL---------LPAHERS-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e++ ++++++++L++++L+l+ +e+g
AP011177_3 298 ----------SDLIEVAANSGKYIQQLLSQMLELAALENG 327

AP011177_0406: domain 1 of 1, from 224 to 289: score 57.2, E = 7.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTPLt+I+g+++lL + ++ ++ q
AP011177_0 224 QEQSFAKYASHELRTPLTVILGATKLLDK---------SAEPDFQ-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i ++a +++ i+ lL l + e+
AP011177_0 260 ----------LRQRDRIAKAATNMQHTIEALLSLVKQEQT 289

AP011177_1837: domain 1 of 1, from 466 to 531: score 53.8, E = 6.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a lsHELRTP++++r +e L + l++++
AP011177_1 466 YLENMSARLSHELRTPVAVVRSSLEHLSL---------QQLDPDT-- 501

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++++++ + rl+ ++n++ + +r+e+
AP011177_1 502 ----------RKYVDRAEEGVSRLNMILNNMSEATRLEES 531

AP011177_1429: domain 1 of 1, from 136 to 202: score 53.4, E = 8.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPLta ++ya+ L ++ s++ r
AP011177_1 136 ALGKMVATLAHQVRTPLTAALLYASNLAS---------PKISAQSR- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ + ++ l++++nd+L +++ + +
AP011177_1 173 ----------ARFQTKLVDRLNELEHQVNDMLLMAKGRGQ 202

AP011177_0243: domain 1 of 1, from 244 to 306: score 51.7, E = 2.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++sHELRTPLt +++++ l+++ + + +
AP011177_0 244 SQQRLISDISHELRTPLTRLQLALALARK---------KGQESAE-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i eae+l+ +i +lL+ls+ +
AP011177_0 280 -------------TERIGYEAEQLELMIAELLELSKVKLN 306

AP011177_0160: domain 1 of 1, from 231 to 291: score 49.2, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ + e+
AP011177_0 231 DRALLMAGISHDLRTPLTRIRLASEMMVA--------------ED-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++in++ + r +++
AP011177_0 262 ----------QYLKDGIVHDIEDMDAIINQFIAYIRQDQE 291

AP011177_0807: domain 1 of 1, from 200 to 269: score 48.3, E = 2.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++sHE+RTPL+ +++++ l+ + +++ +++ r
AP011177_0 200 NHKHLSNAVSHEIRTPLARLKFALALMPQYC------RPDSDPKRR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ ++++++ +++L+++lL+++ +e+
AP011177_0 240 ----------DEFIDEMQQDVKEMEKLLQELLTYASLESK 269

AP011177_0979: domain 1 of 1, from 302 to 367: score 48.1, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L +++g++el++ + see++
AP011177_0 302 AMGQLVGGIAHDFNNILGVLKGNLELMEL----------KTSEETI- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl t+ ++ +r +L ++lL++sr e+
AP011177_0 338 ----------ARYLTTAFKACQRGTDLTRRLLQFSRQEQF 367

AP011177_1800: domain 1 of 1, from 204 to 270: score 46.9, E = 6.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
AP011177_1 204 SKSKFLAAVGHDLMQPLNAARLFTASLAQ--------YPHLDQES-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + ++++ +L+ dlLd+s++++g
AP011177_1 241 ----------KTTLSHVNSSLKIAGELLTDLLDISKLDSG 270

AP011177_4238: domain 1 of 1, from 229 to 293: score 28.5, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ +r +e L + + s e
AP011177_4 229 AVRGATDNIAHDLRTPLSHLRIGLEQLPD----------KTSHEL-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++ +e++++l+ + +L l+rie+g
AP011177_4 264 ----------PEACAILTEELDHCLATFDAMLSLTRIEEG 293


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 7 0|=
-14 63 0|=====
-13 119 3|*========
-12 279 99|=======*============
-11 500 515|====================================*
-10 694 955|================================================== *
-9 805 986|==========================================================*
-8 670 738|================================================ *
-7 499 465|=================================*==
-6 298 267|===================*==
-5 146 147|==========*
-4 94 78|=====*=
-3 65 41|==*==
-2 31 21|=*=
-1 23 11|*=
0 15 5|*=
1 5 3|*
2 2 1|*
> 3 31 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 488.4941
P(chi-square) = 0

Total sequences searched: 4346

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: