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Thermotogae
Classification of phyla is from NCBI page
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25 projects found  

2 accessions found for Deferribacter desulfuricans SSM1  

Data for AP011529  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP011529.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP011529_1173 CDS_1213467-1211017 86.6 1.7e-24 1
AP011529_1363 CDS_1420720-1419101 66.6 8.3e-19 1
AP011529_1177 CDS_1217556-1220855 65.4 1.8e-18 1
AP011529_0394 CDS_390665-391660 63.0 8.5e-18 1
AP011529_1489 CDS_1551575-1550631 59.1 1.1e-16 1
AP011529_2064 CDS_2151352-2150093 57.6 3e-16 1
AP011529_0086 CDS_99502-98081 57.5 3.1e-16 1
AP011529_0950 CDS_979386-980885 56.5 5.8e-16 1
AP011529_1337 CDS_1390632-1388476 52.1 1.1e-14 1
AP011529_0803 CDS_830039-831154 50.8 2.5e-14 1
AP011529_0695 CDS_699292-697937 48.8 8.8e-14 1
AP011529_0012 CDS_14944-16095 46.7 3.6e-13 1
AP011529_1077 CDS_1106360-1107880 46.5 4e-13 1
AP011529_1782 CDS_1843436-1844965 45.7 7.1e-13 1
AP011529_0977 CDS_1004972-1007137 43.6 2.7e-12 1
AP011529_0290 CDS_299186-300481 43.0 3.9e-12 1
AP011529_1091 CDS_1118642-1120882 40.4 2.2e-11 1
AP011529_0724 CDS_739394-740770 40.3 2.4e-11 1
AP011529_1346 CDS_1398137-1396764 38.2 9.4e-11 1
AP011529_0756 CDS_776564-778864 35.1 7.1e-10 1
AP011529_1414 CDS_1470672-1469290 34.7 9.2e-10 1
AP011529_0309 CDS_317429-315393 33.3 2.3e-09 1
AP011529_0562 CDS_557589-555328 32.5 3.8e-09 1
AP011529_0635 CDS_636123-635188 29.0 3.8e-08 1
AP011529_0921 CDS_953025-951529 26.9 1.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP011529_1173 1/1 286 352 .. 1 87 [] 86.6 1.7e-24
AP011529_1363 1/1 320 385 .. 1 87 [] 66.6 8.3e-19
AP011529_1177 1/1 466 532 .. 1 87 [] 65.4 1.8e-18
AP011529_0394 1/1 110 177 .. 1 87 [] 63.0 8.5e-18
AP011529_1489 1/1 95 163 .. 1 87 [] 59.1 1.1e-16
AP011529_2064 1/1 216 281 .. 1 87 [] 57.6 3e-16
AP011529_0086 1/1 259 324 .. 1 87 [] 57.5 3.1e-16
AP011529_0950 1/1 272 340 .. 1 87 [] 56.5 5.8e-16
AP011529_1337 1/1 507 573 .. 1 87 [] 52.1 1.1e-14
AP011529_0803 1/1 159 225 .. 1 87 [] 50.8 2.5e-14
AP011529_0695 1/1 228 294 .. 1 87 [] 48.8 8.8e-14
AP011529_0012 1/1 168 230 .. 1 83 [. 46.7 3.6e-13
AP011529_1077 1/1 297 359 .. 1 87 [] 46.5 4e-13
AP011529_1782 1/1 287 353 .. 1 87 [] 45.7 7.1e-13
AP011529_0977 1/1 500 571 .. 1 87 [] 43.6 2.7e-12
AP011529_0290 1/1 219 283 .. 1 87 [] 43.0 3.9e-12
AP011529_1091 1/1 383 448 .. 1 87 [] 40.4 2.2e-11
AP011529_0724 1/1 242 308 .. 1 87 [] 40.3 2.4e-11
AP011529_1346 1/1 243 309 .. 1 87 [] 38.2 9.4e-11
AP011529_0756 1/1 396 462 .. 1 87 [] 35.1 7.1e-10
AP011529_1414 1/1 250 316 .. 1 87 [] 34.7 9.2e-10
AP011529_0309 1/1 436 502 .. 1 87 [] 33.3 2.3e-09
AP011529_0562 1/1 535 601 .. 1 87 [] 32.5 3.8e-09
AP011529_0635 1/1 90 141 .. 6 78 .. 29.0 3.8e-08
AP011529_0921 1/1 279 344 .. 1 87 [] 26.9 1.4e-07

Alignments of top-scoring domains:
AP011529_1173: domain 1 of 1, from 286 to 352: score 86.6, E = 1.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+an+sHELRTPL++I g++el+l+ ++ + ++
AP011529_1 286 YKNEFIANMSHELRTPLNSIVGLTELILK---------NNQLDNEL- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i ++++ll++ind+Ldls+ie+g
AP011529_1 323 ----------KEKLKIINLSGKQLLNIINDILDLSKIESG 352

AP011529_1363: domain 1 of 1, from 320 to 385: score 66.6, E = 8.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE ++PL++Ir++++l+ + ++e
AP011529_1 320 SLGLLAAGIAHEVKNPLAGIRATVQLMHK---------KSRDENL-- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e +++e++rl++++ndlL++s+ ++
AP011529_1 356 ----------KNMAENVINEIDRLNKIVNDLLQFSKPDEI 385

AP011529_1177: domain 1 of 1, from 466 to 532: score 65.4, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks +la++sHE+RTPL+a+ +++++++e + l e+
AP011529_1 466 VKSNLLATISHEIRTPLNAVTTFLDIMEE--------RKYLKTED-- 502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le+ + +++ l +Lind+Ldls+ie+g
AP011529_1 503 ----------KYLLEKTKYSSNILINLINDVLDLSKIESG 532

AP011529_0394: domain 1 of 1, from 110 to 177: score 63.0, E = 8.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k e++ nl HEL+TP++ I+ yae+Ll + +l++e++
AP011529_0 110 FKMELVGNLTHELKTPIALIMNYAETLLLN--------KDLNDEKK- 147

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i ++a+rl++L++d+ l ++e++
AP011529_0 148 ----------EQFVSNIFESAKRLNDLVSDIILLHKLENE 177

AP011529_1489: domain 1 of 1, from 95 to 163: score 59.1, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ n+ HE++TPL++I+g+++lLl+++ +e+ e++
AP011529_1 95 YSENLVLNMNHEIKTPLNSILGFTSLLLTDF-------EEMEKEDI- 133

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ i+++a+rl+++in++ +l++
AP011529_1 134 ----------VNSLKMIDESAKRLNSMINNVIQLAKKPLS 163

AP011529_2064: domain 1 of 1, from 216 to 281: score 57.6, E = 3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ l+HE+++PL++I g+++ Ll+ te +e++
AP011529_2 216 EMGKFANLLAHEIKNPLSSITGLLQYLLD---------TENNEQK-- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++++e++rl++++nd+L++ r +
AP011529_2 252 ----------QDILLRVRNELKRLNDMVNDFLTYGREIQL 281

AP011529_0086: domain 1 of 1, from 259 to 324: score 57.5, E = 3.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+++HEL++PL +I g++ l+ +++e+
AP011529_0 259 NLGKLTATIAHELKNPLVSIGGFTNRVLK---------LNKDEKL-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl++i++e++r+++LindlL +s++
AP011529_0 295 ----------NGYLNIIKNEVNRMENLINDLLLYSKAIKL 324

AP011529_0950: domain 1 of 1, from 272 to 340: score 56.5, E = 5.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a++sHE+++PL++I+ +++lL ++ ++++++ +
AP011529_0 272 TIGQLMASISHEIKNPLNSIMINTDLLMMYC-------EKMGDKNT- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e i+++aer+ +i++ L +s+ +
AP011529_0 311 ----------KRLVEGIISDAERIKMIIDQTLRFSKYTPN 340

AP011529_1337: domain 1 of 1, from 507 to 573: score 52.1, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++HE+++PL +I+ +a+lL ++l + ++ +
AP011529_1 507 ALGLLAGGVAHEINNPLVGILNFAQLLDKKL--------PENSYE-- 543

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ti+++++ +++n+lL ++r
AP011529_1 544 ----------KKLVKTIIEASKDTKQIVNNLLAFARHKDS 573

AP011529_0803: domain 1 of 1, from 159 to 225: score 50.8, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++an++HE+R+PL +I ++a+lL + + ++++++
AP011529_0 159 SMGVMAANIAHEIRNPLGSIELFASLLAR---------DLKNDKEK- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++++l+ ++++++ i+++L +++ +
AP011529_0 196 ----------RVLIDSVLKGVKSINNTISNILLFTKEVTL 225

AP011529_0695: domain 1 of 1, from 228 to 294: score 48.8, E = 8.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef++n+sHEL+TPLt I++ +e L + ++ se++
AP011529_0 228 REKEFMSNISHELKTPLTIILLSLEKLIQN--------SAISEKD-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+ ++rl+ Li +lL l +e++
AP011529_0 265 ----------KKEIVQIYITIQRLSLLIKNLLMLLSLESN 294

AP011529_0012: domain 1 of 1, from 168 to 230: score 46.7, E = 3.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+++++H++++ L+ I+gy+elL+ el++ +l
AP011529_0 168 LIGKFTSSIAHDIKNLLNIIQGYVELLEI----------ELDDHPAL 204

peLRledpeyreyletilreaerllrLindlLdlsr<-*
+ey+++i e++ + L d+Ld+s+
AP011529_0 205 ----------KEYIDSIVTELKMIHGLTLDILDFSK 230

AP011529_1077: domain 1 of 1, from 297 to 359: score 46.5, E = 4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f ++HE+++PL aI+g ++++++ + +
AP011529_1 297 NLGQFSTIVAHEIKNPLGAIKGSIQIIKK---------QIPN----- 329

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++re++ l+ ++n+lL +s+
AP011529_1 330 ----------KKLVDILEREINKLDMILNNLLYFSKPAKK 359

AP011529_1782: domain 1 of 1, from 287 to 353: score 45.7, E = 7.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+ + +l+HE RTPLt I+ +e++ + + + + +
AP011529_1 287 FKSDIIDSLAHEVRTPLTKIISCIEIITT---------NKDNGKNI- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yle+i+r ++ l +L + +L l ++e
AP011529_1 324 ----------DKYLEIIIRNSKILKDLFDKILLLNKLEYS 353

AP011529_0977: domain 1 of 1, from 500 to 571: score 43.6, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
e ++ ++HE+++PLt I+++ae l++l+ + ++ +e
AP011529_0 500 IWKEIASRIAHEIKNPLTPIKLNAERVLKKLN---EEFEDIPETV-- 541

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ti++e++ l ++in++ +++r+ a
AP011529_0 542 ----------LKSLRTIIDEVNDLYKMINEFNEFARMPAI 571

AP011529_0290: domain 1 of 1, from 219 to 283: score 43.0, E = 3.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + + n HELRTPLt Irg +e + ++ + +e++
AP011529_0 219 LRKKVFTNTIHELRTPLTIIRGELEGIIDGIF-------IPDEKK-- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++il+e+ rl+++++ + l+r+e+
AP011529_0 257 -------------INSILEEIIRLQHIVEGVENLARAESS 283

AP011529_1091: domain 1 of 1, from 383 to 448: score 40.4, E = 2.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++H++++ Lt+I+g++ + + e + ++
AP011529_1 383 SIGQLTAGIAHDFNNILTGISGMTYAVKS---------MESDKNKI- 419

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l i++ ++r ++i++lLd++r +g
AP011529_1 420 -----------KLLTNIENLVDRAANIIRQLLDFARKSEG 448

AP011529_0724: domain 1 of 1, from 242 to 308: score 40.3, E = 2.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++ ++HE+ TP+++I+g++el+l+ + +
AP011529_0 242 ILGQFASKMAHEIGTPMHVIMGNVELILD---------ECEENNFV- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e i r+++ ++++i++ L s+ +
AP011529_0 279 ----------KKRGENIARQINKIQNIIRNYLYVSKKPVP 308

AP011529_1346: domain 1 of 1, from 243 to 309: score 38.2, E = 9.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++HE++TPLt ++++el+++ + +++++
AP011529_1 243 SLGRLAMGIAHEINTPLTNASLTLELIRK--------RIPQDSKL-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ ++ ++r + + +lL +s+ ++
AP011529_1 280 ----------LDKLSMLEANIDRASLIAKELLLFSKDDNL 309

AP011529_0756: domain 1 of 1, from 396 to 462: score 35.1, E = 7.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L+ I y++l+++ +l+e+ +
AP011529_0 396 SIGRLAGGIAHDFNNMLSIIYSYIQLAQM----------HLDEKSQ- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i r++er +L+ +lL ++r
AP011529_0 432 ---------VYSYINEIFRASERATDLVKQLLAFARKMPA 462

AP011529_1414: domain 1 of 1, from 250 to 316: score 34.7, E = 9.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+l+HEL++P+ +I +++ L + ++ ++
AP011529_1 250 SIGMMAAGLAHELKNPIMTINLMVYQLSK--------CSASNSSC-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i++ea+rl r in++L++++ +
AP011529_1 287 ----------HEDLSVIKSEANRLVRRINEFLEYTKPVNI 316

AP011529_0309: domain 1 of 1, from 436 to 502: score 33.3, E = 2.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ n++HE+++ Lt I ++++ Ll d + +++
AP011529_0 436 SINALTGNIAHEINNLLTPIATLSSHLLS--------DKDVNPKV-- 472

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ i ++a +++in++L++s e
AP011529_0 473 ----------KNILKLISDSAFKASNIINRVLEFSMVEKS 502

AP011529_0562: domain 1 of 1, from 535 to 601: score 32.5, E = 3.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
s + ++ H++++ L++I y+ lL+ d+ l+e+
AP011529_0 535 IISNIVTSVVHDINNILSVIVNYTTLLKL--------DSSLNEKN-- 571

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++il+ +e ++ + lL ls i+++
AP011529_0 572 ----------KNILDKILNITEESSNYLKSLLNLSNIGNE 601

AP011529_0635: domain 1 of 1, from 90 to 141: score 29.0, E = 3.8e-08
*->lanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRl
+++l HEL++PLt+I+g+++lLl + ++ +
AP011529_0 90 TSMLQHELKNPLTVISGTTQLLLS----------KSNDSFV------ 120

edpeyreyletilreaerllrLindl<-*
+ e+i re+erll+ +++l
AP011529_0 121 -----NKCAEVISREVERLLEFVQNL 141

AP011529_0921: domain 1 of 1, from 279 to 344: score 26.9, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++++ HE+++PLt+I+ y+++L+ ++ q
AP011529_0 279 TIGQITSGIIHEINNPLTSIKNYLSVLKH---------LCSDSTQ-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++ +e +++L +l ++ r ++
AP011529_0 315 ----------QEILNKLNFGIEKIENLAVNLVTFVRKPEN 344


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 3 0|=
-13 29 1|*====
-12 117 48|======*==========
-11 250 250|===================================*
-10 406 465|==========================================================*
-9 391 480|======================================================== *
-8 307 359|============================================ *
-7 234 226|================================*=
-6 154 130|==================*===
-5 83 71|==========*=
-4 47 38|=====*=
-3 29 20|==*==
-2 13 10|=*
-1 14 5|*=
0 1 2|*
1 2 1|*
2 1 0|=
> 3 36 -|======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 154.8483
P(chi-square) = 1.52e-27

Total sequences searched: 2134

Whole sequence top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: