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1 accessions found for Methanocella paludicola SANAE  

Data for AP011532  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP011532.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP011532_2616 CDS_2570488-2572257 56.2 1e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP011532_2616 1/1 352 420 .. 1 87 [] 56.2 1e-15

Alignments of top-scoring domains:
AP011532_2616: domain 1 of 1, from 352 to 420: score 56.2, E = 1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k ef+ +sHELR+PL+ I+gy+elL + + ++ +++q
AP011532_2 352 TKMEFFTLISHELRNPLAIIKGYTELLYD------GTLGPINDKQ-- 390

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++++ ++ l +++ + ++s +e+
AP011532_2 391 ----------KDKLARVRENVDKLADMVGKMSEISSLESR 420


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 24 0|===
-13 61 2|*=====
-12 207 68|======*============
-11 407 356|================================*====
-10 599 660|======================================================= *
-9 558 682|=================================================== *
-8 451 510|========================================= *
-7 259 321|======================== *
-6 176 185|================*
-5 89 101|=========*
-4 63 54|====*=
-3 33 28|==*
-2 24 15|=*=
-1 9 7|*
0 10 4|*
1 5 2|*
2 7 1|*
3 5 0|=
4 0 0|
5 3 0|=
6 5 0|=
7 0 0|
8 1 0|=
9 0 0|
10 2 0|=
11 2 0|=
12 2 0|=
13 0 0|
14 0 0|
> 15 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 343.1389
P(chi-square) = 0

Total sequences searched: 3004

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: