Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

3 accessions found for Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67  

Data for AY509004  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AY509004.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AY509004_0039 CDS_31627-30035 33.4 1.6e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AY509004_0039 1/1 208 273 .. 1 87 [] 33.4 1.6e-10

Alignments of top-scoring domains:
AY509004_0039: domain 1 of 1, from 208 to 273: score 33.4, E = 1.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl ++ HELRT L aI +++ + +ls +
AY509004_0 208 SKNAFLGMVGHELRTSLQAIVSIIDVVTN----------NLSGGIK- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ ++ ++r++ndl ++++i++g
AY509004_0 244 ----------SGQIERLETAVSKMERQLNDLAEFAKIDNG 273


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 3 0|===
-13 6 0|======
-12 16 3|==*=============
-11 19 20|===================*
-10 26 37|========================== *
-9 31 38|=============================== *
-8 23 28|======================= *
-7 18 18|=================*
-6 15 10|=========*=====
-5 4 5|====*
-4 4 3|==*=
-3 1 1|*
-2 1 0|=
> -1 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 8.1862
P(chi-square) = 0.1463

Total sequences searched: 170

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: