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1 accessions found for Aeropyrum pernix K1  

Data for BA000002  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: BA000002.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]

Alignments of top-scoring domains:
[no hits above thresholds]

Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 6 0|==
-13 24 0|=====
-12 32 18|===*===
-11 51 155|=========== *
-10 217 361|============================================ *
-9 272 410|======================================================= *
-8 242 316|================================================= *
-7 244 198|=======================================*=========
-6 200 112|======================*=================
-5 183 60|===========*=========================
-4 86 31|======*===========
-3 51 16|===*=======
-2 36 8|=*======
-1 20 4|*===
0 16 2|*===
1 7 1|*=
2 4 0|=
3 1 0|=
4 1 0|=
5 2 0|=
6 1 0|=
7 0 0|
8 0 0|
9 1 0|=
> 10 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 790.0746
P(chi-square) = 0

Total sequences searched: 1700

Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K


Acknowledgements:

This research is funded by:

Developed by: