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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Mesorhizobium loti MAFF303099  

Data for BA000012  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BA000012.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000012_2875 CDS_3004311-3000136 98.1 3.1e-27 1
BA000012_2476 CDS_2569581-2571863 96.7 7.8e-27 1
BA000012_2921 CDS_3041928-3044288 96.3 1e-26 1
BA000012_6067 CDS_6375534-6374464 93.9 4.9e-26 1
BA000012_0443 CDS_411726-413246 93.8 5.2e-26 1
BA000012_5131 CDS_5349977-5345931 85.9 9.1e-24 1
BA000012_5252 CDS_5485311-5487227 84.3 2.5e-23 1
BA000012_1848 CDS_1940877-1936009 84.0 3e-23 1
BA000012_4370 CDS_4532708-4533973 82.6 7.7e-23 1
BA000012_2407 CDS_2511543-2508820 81.0 2.2e-22 1
BA000012_6029 CDS_6333830-6335455 79.3 6.4e-22 1
BA000012_3395 CDS_3500998-3499484 75.4 8.5e-21 1
BA000012_3916 CDS_4032863-4030308 67.3 1.7e-18 1
BA000012_3921 CDS_4037822-4036038 63.6 1.9e-17 1
BA000012_0894 CDS_948061-949401 57.3 1.1e-15 1
BA000012_6260 CDS_6564197-6562839 57.2 1.2e-15 1
BA000012_0305 CDS_282038-283180 56.2 2.4e-15 1
BA000012_5183 CDS_5410938-5409340 48.1 4.5e-13 1
BA000012_6065 CDS_6369886-6371343 47.8 5.5e-13 1
BA000012_2827 CDS_2952330-2954390 45.2 2.9e-12 1
BA000012_1052 CDS_1118359-1119684 45.2 3e-12 1
BA000012_5705 CDS_5977029-5978834 45.1 3.2e-12 1
BA000012_0307 CDS_284838-287054 44.8 3.8e-12 1
BA000012_1847 CDS_1935999-1933927 44.3 5.4e-12 1
BA000012_4411 CDS_4580087-4576578 44.3 5.5e-12 1
BA000012_3431 CDS_3545087-3546463 43.7 7.8e-12 1
BA000012_4100 CDS_4234631-4235962 40.8 5.3e-11 1
BA000012_4540 CDS_4715752-4717623 40.7 5.7e-11 1
BA000012_0609 CDS_606195-603499 40.3 7.2e-11 1
BA000012_0774 CDS_807653-804672 36.9 6.9e-10 1
BA000012_6353 CDS_6643515-6639355 35.3 2e-09 1
BA000012_4152 CDS_4293416-4292055 34.5 3.3e-09 1
BA000012_2117 CDS_2201842-2203248 31.1 2.9e-08 1
BA000012_4395 CDS_4563308-4561875 30.9 3.3e-08 1
BA000012_3612 CDS_3730283-3728676 27.8 2.5e-07 1
BA000012_2060 CDS_2148682-2150097 27.0 4.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000012_2875 1/1 839 904 .. 1 87 [] 98.1 3.1e-27
BA000012_2476 1/1 252 317 .. 1 87 [] 96.7 7.8e-27
BA000012_2921 1/1 238 303 .. 1 87 [] 96.3 1e-26
BA000012_6067 1/1 121 190 .. 1 87 [] 93.9 4.9e-26
BA000012_0443 1/1 260 329 .. 1 87 [] 93.8 5.2e-26
BA000012_5131 1/1 1116 1185 .. 1 87 [] 85.9 9.1e-24
BA000012_5252 1/1 142 210 .. 1 87 [] 84.3 2.5e-23
BA000012_1848 1/1 944 1012 .. 1 87 [] 84.0 3e-23
BA000012_4370 1/1 193 260 .. 1 87 [] 82.6 7.7e-23
BA000012_2407 1/1 668 736 .. 1 87 [] 81.0 2.2e-22
BA000012_6029 1/1 283 352 .. 1 87 [] 79.3 6.4e-22
BA000012_3395 1/1 296 364 .. 1 87 [] 75.4 8.5e-21
BA000012_3916 1/1 620 688 .. 1 87 [] 67.3 1.7e-18
BA000012_3921 1/1 358 423 .. 1 87 [] 63.6 1.9e-17
BA000012_0894 1/1 81 146 .. 1 87 [] 57.3 1.1e-15
BA000012_6260 1/1 232 297 .. 1 87 [] 57.2 1.2e-15
BA000012_0305 1/1 139 203 .. 1 87 [] 56.2 2.4e-15
BA000012_5183 1/1 301 372 .. 1 87 [] 48.1 4.5e-13
BA000012_6065 1/1 259 325 .. 1 87 [] 47.8 5.5e-13
BA000012_2827 1/1 323 388 .. 1 87 [] 45.2 2.9e-12
BA000012_1052 1/1 229 287 .. 1 87 [] 45.2 3e-12
BA000012_5705 1/1 383 451 .. 1 87 [] 45.1 3.2e-12
BA000012_0307 1/1 486 557 .. 1 87 [] 44.8 3.8e-12
BA000012_1847 1/1 315 381 .. 1 87 [] 44.3 5.4e-12
BA000012_4411 1/1 806 871 .. 1 87 [] 44.3 5.5e-12
BA000012_3431 1/1 233 299 .. 1 87 [] 43.7 7.8e-12
BA000012_4100 1/1 211 277 .. 1 87 [] 40.8 5.3e-11
BA000012_4540 1/1 404 472 .. 1 87 [] 40.7 5.7e-11
BA000012_0609 1/1 518 584 .. 1 87 [] 40.3 7.2e-11
BA000012_0774 1/1 770 840 .. 1 87 [] 36.9 6.9e-10
BA000012_6353 1/1 1014 1081 .. 1 87 [] 35.3 2e-09
BA000012_4152 1/1 245 303 .. 1 87 [] 34.5 3.3e-09
BA000012_2117 1/1 262 320 .. 1 87 [] 31.1 2.9e-08
BA000012_4395 1/1 270 328 .. 1 87 [] 30.9 3.3e-08
BA000012_3612 1/1 303 369 .. 1 87 [] 27.8 2.5e-07
BA000012_2060 1/1 267 326 .. 1 87 [] 27.0 4.4e-07

Alignments of top-scoring domains:
BA000012_2875: domain 1 of 1, from 839 to 904: score 98.1, E = 3.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g+aelL + ++l+++q
BA000012_2 839 AKSEFLANMSHEIRTPMNGVLGMAELLAK---------SNLDPKQ-- 874

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i ++++ ll +ind+Ld+s+i+ag
BA000012_2 875 ----------KTFTDIIVKSGNALLTIINDILDFSKIDAG 904

BA000012_2476: domain 1 of 1, from 252 to 317: score 96.7, E = 7.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++I+g+a lL + t ls+eq
BA000012_2 252 AKSRFLATVSHEIRTPMNGIMGMARLLAD---------TSLSPEQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+ i +a ll+Li+dlLd+s+ieag
BA000012_2 288 ----------QTYVGAISTSASALLALIEDLLDYSKIEAG 317

BA000012_2921: domain 1 of 1, from 238 to 303: score 96.3, E = 1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g+aelL + tel++ q
BA000012_2 238 AKSEFLANMSHEIRTPMNGVLGMAELLAK---------TELTPRQ-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i ++++ ll +ind+Ld+s+i ag
BA000012_2 274 ----------KTFTDVIVKSGNALLTIINDILDFSKINAG 303

BA000012_6067: domain 1 of 1, from 121 to 190: score 93.9, E = 4.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++el++ +l+ ++l++
BA000012_6 121 AKSEFLANMSHELRTPLNAIIGFSELMEQGLF------GPLGSAR-- 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey i +++++ll ind+Ld+s+ieag
BA000012_6 160 ---------YEEYATDINSSGKYLLGVINDILDMSKIEAG 190

BA000012_0443: domain 1 of 1, from 260 to 329: score 93.8, E = 5.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++ +e+ +++s ++
BA000012_0 260 AKSRFLASMSHELRTPLNAILGFSEVMANEV------LGPMSNPT-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+y + +++++++ll+Lin++Ldlsrieag
BA000012_0 299 ---------YRDYAHDVHDSGQHLLDLINEILDLSRIEAG 329

BA000012_5131: domain 1 of 1, from 1116 to 1185: score 85.9, E = 9.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHE+RTPL+aI+g++el+ + + ++ +
BA000012_5 1116 LKTDFLARISHEIRTPLNAIIGFSELMVD------EKFGPVANDR-- 1154

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+yl+ i r++++ l+L+ndlLd+s+ieag
BA000012_5 1155 ---------YRDYLRDINRSGNHVLDLVNDLLDISKIEAG 1185

BA000012_5252: domain 1 of 1, from 142 to 210: score 84.3, E = 2.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++++sHELRTPLt+Irg + l+ +++ +el+++
BA000012_5 142 LKNDFISTVSHELRTPLTSIRGSLGLIAAGV------VGELPPKA-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++ +erl Lind+Ld+++ie+g
BA000012_5 181 ----------ANLVNIAHTNSERLVLLINDILDMEKIESG 210

BA000012_1848: domain 1 of 1, from 944 to 1012: score 84.0, E = 3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++ ++ lL +++ ++l+e+q
BA000012_1 944 YKSEFLANMSHELRTPLNSLLILSNLLAANQQ------GNLNEKQ-- 982

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti +++ ll+Lind+Ldls+ie+g
BA000012_1 983 ----------VEFARTINSAGTDLLSLINDILDLSKIESG 1012

BA000012_4370: domain 1 of 1, from 193 to 260: score 82.6, E = 7.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL++I g++e+L+ ++++++ ++
BA000012_4 193 MRADFIANASHELRTPLASIAGFIETLRG---------PARNDPAAR 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++++++ r+ rLi+dlL lsr+e
BA000012_4 231 ----------EQFLQIMQNQTGRMARLIDDLLSLSRLEMK 260

BA000012_2407: domain 1 of 1, from 668 to 736: score 81.0, E = 2.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l ++sH+L+TPL+aI+g+a +L+e++ ++l+e++r
BA000012_2 668 LRSALLTSISHDLKTPLSAIMGAAGTLKEFA-------PDLPEQDR- 706

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+t+++e+erl+r i +lLd+++ie+g
BA000012_2 707 ----------AELLSTVIDESERLNRFIANLLDMTKIESG 736

BA000012_6029: domain 1 of 1, from 283 to 352: score 79.3, E = 6.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla +sHELRTPL+aI+g++++Ll e++ ++ ++ +
BA000012_6 283 AKGRFLAVVSHELRTPLNAIIGFSDMLLHEMF------GAFKDPRQ- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+ +++++++ll+ + +Ld srie+g
BA000012_6 323 ----------KEYVTLVRDSGQHLLAVVTSILDVSRIESG 352

BA000012_3395: domain 1 of 1, from 296 to 364: score 75.4, E = 8.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHEL+ PLtaI+g+aelL++ + +++++e+r
BA000012_3 296 SIQTFATHVSHELKSPLTAIQGAAELLRDSG-------STMDDEER- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + i +a rl+ L+++lLdl+++e+
BA000012_3 335 ----------RRFSNNIVTDAGRLNLLVRRLLDLAKAENL 364

BA000012_3916: domain 1 of 1, from 620 to 688: score 67.3, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g++elL + ++l+ +q
BA000012_3 620 LKNDFVQHVSYELRSPLTNIIGFTELLSL------PTTGPLNQKQ-- 658

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+e + +++ ll ++nd+Ldl+ +ag
BA000012_3 659 ----------REYVEHVSSSSSVLLTIVNDILDLATVDAG 688

BA000012_3921: domain 1 of 1, from 358 to 423: score 63.6, E = 1.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++++ r
BA000012_3 358 AIESFAADVSHELKNPLTSLRSAVETLPL----------AKNDNSR- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+++++rl+rLi d+ d sr++a+
BA000012_3 394 ----------SRLMDIIQHDVRRLDRLITDISDASRLDAE 423

BA000012_0894: domain 1 of 1, from 81 to 146: score 57.3, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+ +PL+a + +++L e s+e
BA000012_0 81 SKTRFLAAASHDVLQPLNAAHLSVSALAE---------LQTSDEG-- 116

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ ++r++e +++L++ lLd+s+++ag
BA000012_0 117 ----------RKLVRQVERSLETMEDLLRTLLDISKLDAG 146

BA000012_6260: domain 1 of 1, from 232 to 297: score 57.2, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an++H+LRTPL+ +++ a+ +l+ ++ ++
BA000012_6 232 SQRRFVANAAHQLRTPLALLSTQASYALR---------ETVPDAR-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++ ++ rl rL ++lL+lsr+e g
BA000012_6 268 ----------HEALVALQASSGRLARLAEQLLTLSRAEPG 297

BA000012_0305: domain 1 of 1, from 139 to 203: score 56.2, E = 2.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+l+HE+++PL++Irg+a+lL+ +s+e+
BA000012_0 139 SVTGLAAMLAHEIKNPLSGIRGAAQLLEL----------SASDED-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ +L++++ +s +
BA000012_0 174 ----------RALTRLITDETDRIVSLVDRMEVFSDERPI 203

BA000012_5183: domain 1 of 1, from 301 to 372: score 48.1, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HE+++PLtaI y++ ++ e+s ++++
BA000012_5 301 ALGEMASTLAHEINQPLTAITNYLKGSRR--------LLEKSQDENA 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+L r+++e++ ++a r + i+ l+d+ ++
BA000012_5 340 PML-------RDAVERAAEQALRAGDVIRHLRDFVARGES 372

BA000012_6065: domain 1 of 1, from 259 to 325: score 47.8, E = 5.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + n++H+L+TPLt +r ae+ l ++ + +
BA000012_6 259 GLKQVSDNIAHDLKTPLTRLRNRAEATLS---------GKHRPAD-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++le+ + e+++l + n +L +sr+eag
BA000012_6 295 ---------YRQALESTIAESDQLIKTFNAILMISRLEAG 325

BA000012_2827: domain 1 of 1, from 323 to 388: score 45.2, E = 2.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +la++sHEL++PL+++ + + lL e +s++q+
BA000012_2 323 AMGSLLAGVSHELNNPLAVVVAQSTLLHE----------FASDPQT- 358

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+++ +aer+ r++ +L + r+
BA000012_2 359 ----------KVRAEKVRAAAERCGRIVKSFLSMVRLHPA 388

BA000012_1052: domain 1 of 1, from 229 to 287: score 45.2, E = 3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sH+LRTPLt +r+ ae + +
BA000012_1 229 NRTRMLRSVSHDLRTPLTRLRLRAERMDD------------------ 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
il++++++++Li++ L++ r +
BA000012_1 258 ----------GPVRTAILSDVRHIEDLIDETLTYLRNDVS 287

BA000012_5705: domain 1 of 1, from 383 to 451: score 45.1, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++P++aIr+yae + ++l+ t ++e+
BA000012_5 383 ILGQIAAGVAHEINQPVAAIRTYAENAGRFLE------TGKTEPA-- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i + +er+ ++ n l++++r
BA000012_5 422 ----------SGNLTSIVSMTERIGAITNTLRTFARRPGV 451

BA000012_0307: domain 1 of 1, from 486 to 557: score 44.8, E = 3.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++ ++ + + e
BA000012_0 486 AWADVARRIAHEIKNPLTPIQLSAERIKRRY----GKVITEDREV-- 526

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti+r++e + r+++++ ++r+ +
BA000012_0 527 ---------FDQCTDTIIRQVEDIGRMVDEFSAFARMPKP 557

BA000012_1847: domain 1 of 1, from 315 to 381: score 44.3, E = 5.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L+aI+ + lL++ ++ ++q+
BA000012_1 315 AIGKLTGGLAHDFNNLLAAILSGLGLLER---------HATLDDQA- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++ +r+a++ +L++++L +sr ++
BA000012_1 352 ----------RQVVDLTRRSAKQGAELVSRMLAFSRRQNL 381

BA000012_4411: domain 1 of 1, from 806 to 871: score 44.3, E = 5.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla++ H++ +PL+a r+y++ L e +++ +
BA000012_4 806 GKTRFLAAAGHDILQPLNAARLYCSSLIE----------KAGKGPA- 841

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i++++e+ + ++ +Ld+sr++ag
BA000012_4 842 ----------GKAAVNIESSLESVETILGAVLDISRLDAG 871

BA000012_3431: domain 1 of 1, from 233 to 299: score 43.7, E = 7.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + an++H+L+TPL+ +++ +e + + ++++ +
BA000012_3 233 GMKQVSANIAHDLKTPLNRLQMILEGAAD--------KAARDQDV-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++ e++++++ + lL +++ieag
BA000012_3 270 ----------SDDLADARAEGHQINETFDALLRIAQIEAG 299

BA000012_4100: domain 1 of 1, from 211 to 277: score 40.8, E = 5.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HEL TPL++I + a+ +++ +l+++ +
BA000012_4 211 ALDGLAAAAAHELGTPLATITLVAKEMEK----------ALGSDPK- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e ++ +++++er+++++ +l ls ++
BA000012_4 247 ---------YGEDVKLLRSQSERCREILKRLTSLSSEGEA 277

BA000012_4540: domain 1 of 1, from 404 to 472: score 40.7, E = 5.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++P++aIr+yae + + l + ++++
BA000012_4 404 ILGQITAGVAHEINQPVAAIRTYAENAARLL-------GIGRSQET- 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +i + r+ + + l+ +sr +g
BA000012_4 443 ----------AENLTSIVAMTGRIGTITETLRSFSRRASG 472

BA000012_0609: domain 1 of 1, from 518 to 584: score 40.3, E = 7.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+++++lLl+ +++++
BA000012_0 518 AVGQLAGGIAHDFNNVLTAIIMASDLLLT---------NHRPSDPS- 554

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +L+++lL +sr ++
BA000012_0 555 ----------FPDIMNIKQNANRAASLVRQLLAFSRKQTL 584

BA000012_0774: domain 1 of 1, from 770 to 840: score 36.9, E = 6.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e+ a+++HE ++PL+a+ +++ +++++l +e + qr+
BA000012_0 770 SLAELSASIAHEVNQPLAAVVANSNACERWLM------AEPPNVQRA 810

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+r+a++ + +++++ l +
BA000012_0 811 ----------QKIVGRIIRDANSAADVVSRIRALFKQSLD 840

BA000012_6353: domain 1 of 1, from 1014 to 1081: score 35.3, E = 2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++I+g + lL+++l ++ +
BA000012_6 1014 AVGQLTGGIAHDFNNMLAVIIGGLNLLQRKL-------SKGETDV-- 1051

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e + + a+r +L ++lL +sr +
BA000012_6 1052 ----------GRFVEGAMDGAHRAAALTQRLLAFSRQQPL 1081

BA000012_4152: domain 1 of 1, from 245 to 303: score 34.5, E = 3.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fl +++HELRTP++ + + + L +
BA000012_4 245 RHKRFLTDAAHELRTPVAILNTRLASLPA------------------ 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++a rl+ L ++lLdl r++ +
BA000012_4 274 ----------TPERARLLQDAARLSTLTDQLLDLQRLDRQ 303

BA000012_2117: domain 1 of 1, from 262 to 320: score 31.1, E = 2.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a+l+H+LRTP+t +r+ +elL++
BA000012_2 262 DREHLAAALAHDLRTPMTRMRLRLELLRK------------------ 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +++ +++ + + d++ e +
BA000012_2 291 ----------SAVREALAHDLADVESIASSVIDFATFEVN 320

BA000012_4395: domain 1 of 1, from 270 to 328: score 30.9, E = 3.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++fl +++HELRTP++ +r+ aelL
BA000012_4 270 RHNRFLTDAAHELRTPIAILRTRAELLTQ------------------ 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++l+++erl++L ++lLd ++ +
BA000012_4 299 ----------EPQSARLLQDIERLSHLAQQLLDHQLLDRP 328

BA000012_3612: domain 1 of 1, from 303 to 369: score 27.8, E = 2.5e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ +++H++ + L Ir + +lL+ +++++
BA000012_3 303 SIGRFAGGVAHDFGNSLRIIRSAFSLLRP--------LVAKNPDA-- 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++r++ ++Li++lL +sr ++
BA000012_3 340 ----------TALLVNADRSVGDARELIEQLLSISRNRNL 369

BA000012_2060: domain 1 of 1, from 267 to 326: score 27.0, E = 4.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l ++sH+LRT Lt ++ + l+ +
BA000012_2 267 QRTAMLTGVSHDLRTILTRFKLQLALAGGK----------------- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++++ ++++++ L ++r ea
BA000012_2 297 ----------TETKAALNQDIDDMQSMLEGYLAFARGEAS 326


Histogram of all scores:
score obs exp (one = represents 24 sequences)
----- --- ---
-14 23 0|=
-13 87 5|*===
-12 314 154|======*=======
-11 678 800|============================= *
-10 1190 1484|================================================== *
-9 1409 1533|==========================================================*
-8 1152 1148|===============================================*
-7 787 723|==============================*==
-6 493 416|=================*===
-5 269 228|=========*==
-4 141 122|=====*
-3 74 64|==*=
-2 45 33|=*
-1 16 17|*
0 16 9|*
1 7 4|*
2 2 2|*
> 3 49 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 1617.5703
P(chi-square) = 0

Total sequences searched: 6752

Whole sequence top hits:
tophits_s report:
Total hits: 36
Satisfying E cutoff: 36
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 36
Satisfying E cutoff: 36
Total memory: 35K


Acknowledgements:

This research is funded by:

Developed by: