Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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39 projects found  

5 accessions found for Synechocystis sp. PCC 6803  

Data for BA000022  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BA000022.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000022_2626 CDS_2929700-2927280 103.6 4e-29 1
BA000022_1645 CDS_1810946-1808922 100.8 2.5e-28 2
BA000022_1307 CDS_1444046-1441002 99.7 5e-28 1
BA000022_0478 CDS_533086-537474 96.3 4.6e-27 1
BA000022_1420 CDS_1572849-1575701 94.9 1.2e-26 1
BA000022_1414 CDS_1563115-1566900 94.9 1.2e-26 1
BA000022_0109 CDS_126443-124452 94.1 1.9e-26 1
BA000022_0228 CDS_255629-253125 93.3 3.3e-26 1
BA000022_1508 CDS_1666699-1664798 92.6 5.3e-26 1
BA000022_0981 CDS_1087753-1084757 92.2 6.9e-26 1
BA000022_0632 CDS_701343-704267 90.1 2.7e-25 1
BA000022_2254 CDS_2518321-2521857 88.2 9.2e-25 1
BA000022_2466 CDS_2747604-2748857 85.4 5.7e-24 1
BA000022_1623 CDS_1783355-1782057 84.9 8.1e-24 1
BA000022_2391 CDS_2661959-2663284 84.5 1e-23 1
BA000022_1619 CDS_1777729-1779981 78.8 4.3e-22 1
BA000022_3020 CDS_3400350-3399457 71.8 4.2e-20 1
BA000022_2739 CDS_3064925-3063549 70.6 8.9e-20 1
BA000022_1497 CDS_1653402-1654664 69.9 1.5e-19 1
BA000022_2349 CDS_2618067-2620094 68.6 3.4e-19 1
BA000022_2728 CDS_3050266-3048902 66.9 9.8e-19 1
BA000022_1415 CDS_1566990-1568090 66.6 1.3e-18 1
BA000022_0790 CDS_866377-862262 66.0 1.8e-18 1
BA000022_0375 CDS_402290-403432 64.8 4e-18 1
BA000022_2123 CDS_2372110-2370818 61.0 4.9e-17 1
BA000022_0467 CDS_520272-518287 60.2 8.2e-17 1
BA000022_2852 CDS_3192683-3193900 59.5 1.2e-16 1
BA000022_1804 CDS_1981471-1980365 56.2 1.1e-15 1
BA000022_2175 CDS_2422687-2421536 51.8 2e-14 1
BA000022_2339 CDS_2607812-2610058 48.3 1.9e-13 1
BA000022_0726 CDS_811489-812793 43.5 4.3e-12 1
BA000022_1349 CDS_1492686-1491634 41.7 1.4e-11 1
BA000022_1647 CDS_1811746-1813557 40.5 3.1e-11 2
BA000022_2933 CDS_3290785-3289256 38.3 1.2e-10 1
BA000022_2679 CDS_2991898-2990525 35.6 7.2e-10 1
BA000022_1507 CDS_1664690-1663554 35.3 9.2e-10 1
BA000022_1712 CDS_1881917-1883311 33.7 2.6e-09 1
BA000022_1155 CDS_1278293-1280542 32.1 7.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000022_2626 1/1 417 485 .. 1 87 [] 103.6 4e-29
BA000022_1645 2/2 437 505 .. 1 87 [] 100.0 4.2e-28
BA000022_1307 1/1 320 385 .. 1 87 [] 99.7 5e-28
BA000022_0478 1/1 777 842 .. 1 87 [] 96.3 4.6e-27
BA000022_1420 1/1 457 522 .. 1 87 [] 94.9 1.2e-26
BA000022_1414 1/1 526 591 .. 1 87 [] 94.9 1.2e-26
BA000022_0109 1/1 422 490 .. 1 87 [] 94.1 1.9e-26
BA000022_0228 1/1 364 430 .. 1 87 [] 93.3 3.3e-26
BA000022_1508 1/1 162 227 .. 1 87 [] 92.6 5.3e-26
BA000022_0981 1/1 599 665 .. 1 87 [] 92.2 6.9e-26
BA000022_0632 1/1 725 807 .. 1 87 [] 90.1 2.7e-25
BA000022_2254 1/1 939 1007 .. 1 87 [] 88.2 9.2e-25
BA000022_2466 1/1 185 253 .. 1 87 [] 85.4 5.7e-24
BA000022_1623 1/1 193 260 .. 1 87 [] 84.9 8.1e-24
BA000022_2391 1/1 195 262 .. 1 87 [] 84.5 1e-23
BA000022_1619 1/1 378 449 .. 1 87 [] 78.8 4.3e-22
BA000022_3020 1/1 68 137 .. 1 87 [] 71.8 4.2e-20
BA000022_2739 1/1 218 284 .. 1 87 [] 70.6 8.9e-20
BA000022_1497 1/1 187 255 .. 1 87 [] 69.9 1.5e-19
BA000022_2349 1/1 413 480 .. 1 87 [] 68.6 3.4e-19
BA000022_2728 1/1 223 290 .. 1 87 [] 66.9 9.8e-19
BA000022_1415 1/1 143 210 .. 1 87 [] 66.6 1.3e-18
BA000022_0790 1/1 1146 1214 .. 1 87 [] 66.0 1.8e-18
BA000022_0375 1/1 136 202 .. 1 87 [] 64.8 4e-18
BA000022_2123 1/1 197 261 .. 1 87 [] 61.0 4.9e-17
BA000022_0467 1/1 437 505 .. 1 87 [] 60.2 8.2e-17
BA000022_2852 1/1 177 241 .. 1 87 [] 59.5 1.2e-16
BA000022_1804 1/1 136 204 .. 1 87 [] 56.2 1.1e-15
BA000022_2175 1/1 154 226 .. 1 87 [] 51.8 2e-14
BA000022_2339 1/1 528 596 .. 1 87 [] 48.3 1.9e-13
BA000022_0726 1/1 175 240 .. 1 87 [] 43.5 4.3e-12
BA000022_1349 1/1 122 190 .. 1 87 [] 41.7 1.4e-11
BA000022_2933 1/1 256 308 .. 17 87 .] 38.3 1.2e-10
BA000022_1647 1/2 10 66 .. 1 76 [. 37.1 2.9e-10
BA000022_2679 1/1 219 285 .. 1 87 [] 35.6 7.2e-10
BA000022_1507 1/1 145 215 .. 1 87 [] 35.3 9.2e-10
BA000022_1712 1/1 231 291 .. 4 87 .] 33.7 2.6e-09
BA000022_1155 1/1 526 593 .. 1 87 [] 32.1 7.4e-09

Alignments of top-scoring domains:
BA000022_2626: domain 1 of 1, from 417 to 485: score 103.6, E = 4e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan+sHELRTPL++I+g++e+L+++++ ++l+ +q
BA000022_2 417 LKDEFLANMSHELRTPLNSILGMIETLQNQVY------GPLNGKQ-- 455

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le++++++++ll+Lind+Ldls+ieag
BA000022_2 456 ----------VQSLEIVENSGRHLLSLINDILDLSKIEAG 485

BA000022_1645: domain 2 of 2, from 437 to 505: score 100.0, E = 4.2e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHELRTPL+aI+gy+e+L ee+ ++l++e++
BA000022_1 437 TKSIFLANMSHELRTPLNAIIGYSEMLIEEA-------EDLDSEEL- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++ilr++++ll+LindlLd+s+ieag
BA000022_1 476 ----------VPDLDKILRSGKSLLALINDLLDISKIEAG 505

BA000022_1307: domain 1 of 1, from 320 to 385: score 99.7, E = 5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefla++sHE+RTP++aI+g++ lLl+ t+l+ +q
BA000022_1 320 SKSEFLATMSHEIRTPMNAIIGMTGLLLD---------TDLTTQQ-- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +ti++++e ll Lind+Ld+s+ieag
BA000022_1 356 ----------KYFAQTIRNSGETLLTLINDILDFSKIEAG 385

BA000022_0478: domain 1 of 1, from 777 to 842: score 96.3, E = 4.6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTP+++++g++elL + t+l+ +q
BA000022_0 777 AKGEFLAMMSHEIRTPMNGVIGMTELLIM---------TDLNLQQ-- 812

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti++++e ll +ind+Ld+s+iea
BA000022_0 813 ----------LDYVQTIRQSGETLLTIINDILDFSKIEAD 842

BA000022_1420: domain 1 of 1, from 457 to 522: score 94.9, E = 1.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++aI+g++el l t+l+++q
BA000022_1 457 AKSEFLANMSHEIRTPMNAIIGMSELVLQ---------TDLTSQQ-- 492

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl++++ ++e ll +in++Ld+s++eag
BA000022_1 493 ----------RNYLQKVQYAGELLLGIINNILDFSKMEAG 522

BA000022_1414: domain 1 of 1, from 526 to 591: score 94.9, E = 1.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +flan+sHE+RTP++a++g+++l+l+ t+l++ q
BA000022_1 526 IKADFLANMSHEIRTPMNAVIGMTHLALK---------TDLTPRQ-- 561

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl++i+ ++++ll ind+Ld+s+ieag
BA000022_1 562 ----------REYLHKIRFSGQHLLGVINDILDFSKIEAG 591

BA000022_0109: domain 1 of 1, from 422 to 490: score 94.1, E = 1.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f++n+sHELRTPL I+ ++e+L e++ ++lse +r
BA000022_0 422 AKSQFISNVSHELRTPLFNIKSFIETLSEFG-------EDLSEVER- 460

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+let+ +e++rl+rL+nd+Ldls++e+
BA000022_0 461 ----------KEFLETANHETDRLSRLVNDVLDLSKLESS 490

BA000022_0228: domain 1 of 1, from 364 to 430: score 93.3, E = 3.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+an+sHELR PL+aI+g+++l+l+ +l+ eq
BA000022_0 364 AKSTFVANMSHELRSPLNAIIGFSQLMLR--------TKNLPMEQ-- 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +i+r++e+ll+Lin++Ld+s+ieag
BA000022_0 401 ----------YENAGIIQRSGEYLLNLINNILDFSKIEAG 430

BA000022_1508: domain 1 of 1, from 162 to 227: score 92.6, E = 5.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHELRTPL+aI+g+++lL + ++ +++
BA000022_1 162 AKTEFLASISHELRTPLNAIIGFSQLLHR---------DPSLAPH-- 197

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i r++e+ll+Lind+L++s+ieag
BA000022_1 198 ----------RPTLDIINRSGEHLLELINDILEMSKIEAG 227

BA000022_0981: domain 1 of 1, from 599 to 665: score 92.2, E = 6.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++lLl +ls q+
BA000022_0 599 VKSEFLANISHEIRTPMNAILGFCDLLLQ---------KDLSLSQT- 635

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ i ++++ ll+Li+d+Ld+s+ieag
BA000022_0 636 ----------KKYLNAIGSSSKILLALIDDILDISKIEAG 665

BA000022_0632: domain 1 of 1, from 725 to 807: score 90.1, E = 2.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldk.......v.lagdt
+k++fla++sHELRTPLt+I+g+a +++++l++ ++ ++ +++ +
BA000022_0 725 MKTDFLATVSHELRTPLTSILGFATVIQDKLNRviipeldLaQPHLG 771

elseeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-
+++e + l +i++ea+rl Lind+Ld++++eag
BA000022_0 772 KATERV------------MRNLAIIESEAQRLTVLINDVLDIAKMEAG 807

*

BA000022_0 - -

BA000022_2254: domain 1 of 1, from 939 to 1007: score 88.2, E = 9.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+ +sHE+RTPLt+I+g+ elL +++ + ls e++
BA000022_2 939 AKSQFVDIVSHEFRTPLTSIIGFGELLSKYF-------DRLSTEKK- 977

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ i+++++rl +Li+d+L +sr +a+
BA000022_2 978 ----------QQYINNIQNSSQRLKQLIDDVLSISRYDAN 1007

BA000022_2466: domain 1 of 1, from 185 to 253: score 85.4, E = 5.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++ HE+RTPLtaI+g+a +L++el+ ++l+++q
BA000022_2 185 SMTINLSHIHHEFRTPLTAIIGFARMLRDELY------GKLNPKQ-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ l++ae+ll+L+nd+Ldls+i+a
BA000022_2 224 ----------HQYVQGTLNSAEHLLSLVNDFLDLSKIDAR 253

BA000022_1623: domain 1 of 1, from 193 to 260: score 84.9, E = 8.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla+ HELRTPL++I+g++ l+l+++ ++ +e+
BA000022_1 193 LKSEFLASTTHELRTPLNGIIGFLRLILDDM-------ADSEAEK-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e ++++a ll+Lind+Ldl++ieag
BA000022_1 231 ----------HEFVEEAYQSALLLLNLINDILDLAKIEAG 260

BA000022_2391: domain 1 of 1, from 195 to 262: score 84.5, E = 1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sHELR+P+++I+++++ +le ++e++++q+
BA000022_2 195 SLKQFTADASHELRNPIAVIQTNVQQALE--------YPEADPQQQ- 232

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++i+r ++rl +L+ndlL l+r ++g
BA000022_2 233 ----------RQQLQVIERLTQRLGNLVNDLLFLARSDSG 262

BA000022_1619: domain 1 of 1, from 378 to 449: score 78.8, E = 4.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+ n+sHELRTPLt+I+g++ +Ll+++d + + l++ ++
BA000022_1 378 LKSQFINNISHELRTPLTSIIGLSATLLRWFD----HPASLPPAKQ- 419

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl i++ ++ ll++in + +ls++e+g
BA000022_1 420 ----------QYYLLNIQENGKKLLDQINSIIQLSQLESG 449

BA000022_3020: domain 1 of 1, from 68 to 137: score 71.8, E = 4.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++++sHE+RTPL++ +++a+lL++ + + l++++r
BA000022_3 68 LKTRFFSMASHEFRTPLSTALAAAQLLEN------SEVAWLDPDKR- 107

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+++++ + +L++d+L + r+eag
BA000022_3 108 ----------SRNLHRIQNSVKNMVQLLDDILIINRAEAG 137

BA000022_2739: domain 1 of 1, from 218 to 284: score 70.6, E = 8.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTP+taI++++e+ l+ +e ++e++
BA000022_2 218 QIQQFTADIAHELRTPITAIQATLETTLN---------AEPNAEET- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+t++r+ rl++Li dlL lsr++
BA000022_2 255 ----------HSTLQTLKRQNYRLSHLIHDLLLLSRMDLT 284

BA000022_1497: domain 1 of 1, from 187 to 255: score 69.9, E = 1.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+++lsH++R+PL++I++ a lL+e + + ls q+
BA000022_1 187 LKSEFVSMLSHDFRNPLNTILLSAGLLEESG-------DRLSKGQQ- 225

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i+ +++ l++L++++L l + e+g
BA000022_1 226 ----------HNYFNMIRTAIKDLDELLSEVLLLGKTENG 255

BA000022_2349: domain 1 of 1, from 413 to 480: score 68.6, E = 3.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s ++a HELRTPL++I+ +e L + +++++ e r
BA000022_2 413 TRSNLVAITGHELRTPLSTIQVCLESLAT--------EPDMPQELR- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+t+l++aer+++L++d+L+ls++e+g
BA000022_2 451 ----------QVMLNTALEDAERMRKLVQDFLTLSQLESG 480

BA000022_2728: domain 1 of 1, from 223 to 290: score 66.9, E = 9.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an++HELR PL+++++++e+ l+ +d+ s+e
BA000022_2 223 QQQQFTANAAHELRSPLASLLATVEAVLR-------IDSSHSPEI-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+t++r+++rl++Li dlL lsr+e++
BA000022_2 261 ----------NTMLHTVERQGRRLSQLITDLLLLSRLEQE 290

BA000022_1415: domain 1 of 1, from 143 to 210: score 66.6, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++ H+LR+PL++I++++elLl+ ++l+ + +
BA000022_1 143 FREDMVNMIVHDLRNPLSSISLATELLLN--------KPDLPLDRQ- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+ ++++l++L++dlL +++e+
BA000022_1 181 ----------QKKLKSIQTSTQQLQNLVEDLLLKAQLESH 210

BA000022_0790: domain 1 of 1, from 1146 to 1214: score 66.0, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f+++ sHE+RTPL+ I+ + +L+++ +++l+ + r
BA000022_0 1146 LRSRFISTTSHEFRTPLAIISSSTGILKKY-------WPKLDGQRR- 1184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+i+++++++ +L++d+L++ r+e+
BA000022_0 1185 ----------GQHLERIEESVHHMVELLDDVLTINRAETK 1214

BA000022_0375: domain 1 of 1, from 136 to 202: score 64.8, E = 4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ ++ H+LR+PLt +++ +++L++ +++d++l++e
BA000022_0 136 QRESMVHMIVHDLRNPLTNLILGIQVLQR-----SHSDAPLPPER-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++l++++++++L++d+L s+ e+g
BA000022_0 176 -------------LDRLLQAGQQIQHLVDDMLVVSKQEHG 202

BA000022_2123: domain 1 of 1, from 197 to 261: score 61.0, E = 4.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++l+HELRTPLta+ + ae L++ l++e+
BA000022_2 197 GRDQAFSDLAHELRTPLTAVALIAERLQA----------RLPAED-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e++l+e+ rl++L++ L l++i a+
BA000022_2 232 ----------GDWAERLLKEISRLQNLVESWLHLTQITAN 261

BA000022_0467: domain 1 of 1, from 437 to 505: score 60.2, E = 8.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+sef+ ++sH++RTPLt+I+ +a+++ + +++l++e+r
BA000022_0 437 LRSEFITAISHQFRTPLTTISCAASIMGK-------FEAKLTDEKR- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e+ilr a+++++Li d+ ++ +++
BA000022_0 476 ----------VQYIESILRGAKQIDELIGDIITINLNQEE 505

BA000022_2852: domain 1 of 1, from 177 to 241: score 59.5, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++++l HELR PLt++rgy+e L e ++ +
BA000022_2 177 QRRELVSDLTHELRSPLTVVRGYLEQLAE---------GTIAGDP-- 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +++ e++rl+rL dl +ls+ eag
BA000022_2 213 -----------ELYQRLVGETRRLERLTVDLQELSKVEAG 241

BA000022_1804: domain 1 of 1, from 136 to 204: score 56.2, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++l HEL TPL++I+g+++lL +++ + ls ++
BA000022_1 136 LRQQVTRSLPHELLTPLNGILGTSQLLINFY-------DSLSHNEV- 174

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ i+ ++erl rL++++L ++ ++
BA000022_1 175 ----------MESLHDIKTSGERLHRLVENFLLMADLDLL 204

BA000022_2175: domain 1 of 1, from 154 to 226: score 51.8, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++ la+l+H+LR PLta + ++++L+ ++++ e++
BA000022_2 154 FKDQILAMLAHDLRSPLTAASIAVDTLEL--------LQHKPIEEQK 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+LR ++l ++++ + ++rLi+d+L+ s+ +
BA000022_2 193 PALR------SQLLYQARKQFKIMDRLIEDILQASKNLNS 226

BA000022_2339: domain 1 of 1, from 528 to 596: score 48.3, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+ +sH+L PL+ ++ y++lL++++ +++l+e+
BA000022_2 528 DLKKFAYIASHDLQEPLNQVSNYVQLLEMRY------SEALDEDA-- 566

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + + ++ Li+d+L++++ +++
BA000022_2 567 ----------KDFIDFAVTGVSLMQTLIDDILTYAKVDTQ 596

BA000022_0726: domain 1 of 1, from 175 to 240: score 43.5, E = 4.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ a+l H+LR+PLta++++++lLl+ + + + +
BA000022_0 175 WERQHWADLLHQLRNPLTALKTFSKLLLK--------RWHGDNKS-- 211

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e i r++e+l++L++ + + s+ + +
BA000022_0 212 ----------QQVVEGIVRQGEHLQELLQSF-EASQSQGP 240

BA000022_1349: domain 1 of 1, from 122 to 190: score 41.7, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+++l H+L+TPL + + ++ + +++++ ++ + q
BA000022_1 122 VREDFVSTLTHDLKTPLLGAIETLNAFQAGQF------GAVTHNQ-- 160

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++ r+ + l+L++ l+d r +++
BA000022_1 161 ----------QRAIAIMMRSHRMTLQLVETLMDVYRNDTE 190

BA000022_2933: domain 1 of 1, from 256 to 308: score 38.3, E = 1.2e-10
*->LtaIrgyaelLleeldkvlagdtelseeqrlpeLRledpeyreylet
Lta++g+a++L++e++ ++l+++q ++yle+
BA000022_2 256 LTAVIGMASVLRDEVF------GKLNDKQ------------KQYLEI 284

ilreaerllrLindlLdlsrieag<-*
i+++++r ++ i+++ +l++i
BA000022_2 285 IHQSGQRVNQAIEEIIELEQIKPV 308

BA000022_1647: domain 1 of 2, from 10 to 66: score 37.1, E = 2.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +a ++HELRTP++aI gy e+ +eel +e++++
BA000022_1 10 DIESATAFIRHELRTPINAIVGYGEMVQEEL-------AEANSPL-- 47

peLRledpeyreyletilreaerllrLin<-*
e ++t+l ea+ ll++in
BA000022_1 48 ----------TEEIDTLLVEAQKLLEIIN 66

BA000022_2679: domain 1 of 1, from 219 to 285: score 35.6, E = 7.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +s + R+PL++Ir+ + +L++ t+ ++e++
BA000022_2 219 LINNIITIMSDQTRNPLATIRMVVATLRA---------TPPTPEKL- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +i+++ + l+++ + +L+l ++ ++
BA000022_2 256 ----------EQRLVIIDQAWDKLNDINSKILQLKQLKQE 285

BA000022_1507: domain 1 of 1, from 145 to 215: score 35.3, E = 9.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+ +sH+LR+P+ ++++ + +l+++d ++++e ++
BA000022_1 145 SLEVSLRVVSHDLRNPVLGLSMVLNNCLKRAD------PDQTELSLP 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le + r+ er l+Lin l + e++
BA000022_1 186 ----------RQTLEQMARSCERQLALINSLVESQHWEQQ 215

BA000022_1712: domain 1 of 1, from 231 to 291: score 33.7, E = 2.6e-09
*->eflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeL
e+l +l HE RTPLt+Ir++++lLl+ + +ls+e
BA000022_1 231 ELLQALTHEVRTPLTSIRTLTKLLLR--------RKDLSPEV----- 264

RledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i++ + ++++i+++ + r+ +
BA000022_1 265 ----------LKRIESIDRECSDQISRMDLIFRATEL 291

BA000022_1155: domain 1 of 1, from 526 to 593: score 32.1, E = 7.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k f+ ++sH+LRT + ++++ ++ L + te + +++
BA000022_1 526 MKALFVQAISHDLRTSVMGLLMVLKNLST---------TEGEALTLP 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l++++r+++r l L+n l + +e
BA000022_1 564 ----------RHLLDSLIRSGDRQLTLLNALCEEQTAECR 593


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 10 0|=
-13 31 2|*===
-12 134 72|=======*======
-11 315 375|================================ *
-10 581 696|==========================================================*
-9 548 719|======================================================= *
-8 544 538|=====================================================*=
-7 366 339|=================================*===
-6 255 195|===================*======
-5 148 107|==========*====
-4 76 57|=====*==
-3 48 30|==*==
-2 27 15|=*=
-1 16 8|*=
0 16 4|*=
1 4 2|*
2 5 1|*
3 1 0|=
> 4 42 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 189.3834
P(chi-square) = 1.179e-34

Total sequences searched: 3167

Whole sequence top hits:
tophits_s report:
Total hits: 38
Satisfying E cutoff: 38
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 38
Satisfying E cutoff: 38
Total memory: 36K


Acknowledgements:

This research is funded by:

Developed by: