Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

2 accessions found for Streptomyces avermitilis MA-4680  

Data for BA000030  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: BA000030.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000030_3020 CDS_3773449-3771944 106.8 6.3e-30 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000030_3020 1/1 303 372 .. 1 76 [. 106.8 6.3e-30

Alignments of top-scoring domains:
BA000030_3020: domain 1 of 1, from 303 to 372: score 106.8, E = 6.3e-30
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar++++ +eaL+E+++RV S
BA000030_3 303 EIHHRVKNNLQTVAALLRLQARRIDSDSG-----REALEEAVRRVGS 344

mAliHEeLYksedldtvdfseYlekLten<-*
+A++HE L+++ d ++v+f+e +++++
BA000030_3 345 IAIVHETLSQNLD-ERVEFDEIADRVLAM 372


Histogram of all scores:
score obs exp (one = represents 36 sequences)
----- --- ---
-15 15 0|=
-14 41 0|==
-13 149 47|=*===
-12 524 497|=============*=
-11 2114 1385|======================================*====================
-10 1744 1793|=================================================*
-9 1154 1514|================================= *
-8 855 1016|======================== *
-7 411 603|============ *
-6 311 336|=========*
-5 114 181|==== *
-4 70 95|==*
-3 41 50|=*
-2 10 26|*
-1 11 13|*
0 3 7|*
1 5 3|*
2 1 1|*
3 2 0|=
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 821.6884
P(chi-square) = 0

Total sequences searched: 7577

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: