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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Vibrio parahaemolyticus RIMD 2210633  

Data for BA000031  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BA000031.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000031_1755 CDS_1870069-1873224 100.0 4.1e-28 1
BA000031_2567 CDS_2712492-2715290 94.3 1.7e-26 1
BA000031_1069 CDS_1117611-1120031 93.7 2.5e-26 1
BA000031_1547 CDS_1656854-1658584 89.7 3.4e-25 1
BA000031_1876 CDS_1960600-1958900 82.4 4.1e-23 1
BA000031_0570 CDS_592933-594231 76.6 1.8e-21 1
BA000031_2478 CDS_2605254-2608640 74.7 6.1e-21 1
BA000031_0487 CDS_502547-504898 69.1 2.3e-19 1
BA000031_1984 CDS_2078327-2079631 63.8 7.2e-18 1
BA000031_0362 CDS_359330-360718 61.5 3.3e-17 1
BA000031_1735 CDS_1849920-1851350 59.3 1.4e-16 1
BA000031_0119 CDS_128567-127521 58.7 2e-16 1
BA000031_2874 CDS_3045401-3041970 57.0 6.3e-16 1
BA000031_2252 CDS_2366602-2365571 55.8 1.4e-15 1
BA000031_2859 CDS_3025650-3027053 54.0 4.4e-15 1
BA000031_0155 CDS_165554-166846 50.0 6.1e-14 2
BA000031_0915 CDS_951282-949480 45.1 1.4e-12 1
BA000031_2010 CDS_2105803-2104070 41.5 1.6e-11 1
BA000031_1503 CDS_1612217-1614256 41.2 1.9e-11 1
BA000031_1201 CDS_1263231-1264919 36.5 3.9e-10 1
BA000031_1968 CDS_2059377-2061929 33.7 2.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000031_1755 1/1 394 459 .. 1 87 [] 100.0 4.1e-28
BA000031_2567 1/1 290 355 .. 1 87 [] 94.3 1.7e-26
BA000031_1069 1/1 352 417 .. 1 87 [] 93.7 2.5e-26
BA000031_1547 1/1 214 279 .. 1 87 [] 89.7 3.4e-25
BA000031_1876 1/1 204 269 .. 1 87 [] 82.4 4.1e-23
BA000031_0570 1/1 205 272 .. 1 87 [] 76.6 1.8e-21
BA000031_2478 1/1 459 527 .. 1 87 [] 74.7 6.1e-21
BA000031_0487 1/1 282 347 .. 1 87 [] 69.1 2.3e-19
BA000031_1984 1/1 224 289 .. 1 87 [] 63.8 7.2e-18
BA000031_0362 1/1 231 297 .. 1 87 [] 61.5 3.3e-17
BA000031_1735 1/1 260 325 .. 1 87 [] 59.3 1.4e-16
BA000031_0119 1/1 129 194 .. 1 87 [] 58.7 2e-16
BA000031_2874 1/1 788 853 .. 1 87 [] 57.0 6.3e-16
BA000031_2252 1/1 122 188 .. 1 87 [] 55.8 1.4e-15
BA000031_2859 1/1 248 310 .. 1 87 [] 54.0 4.4e-15
BA000031_0155 2/2 222 282 .. 1 87 [] 46.6 5.5e-13
BA000031_0915 1/1 372 440 .. 1 87 [] 45.1 1.4e-12
BA000031_2010 1/1 353 422 .. 1 87 [] 41.5 1.6e-11
BA000031_1503 1/1 448 515 .. 1 87 [] 41.2 1.9e-11
BA000031_1201 1/1 335 398 .. 1 81 [. 36.5 3.9e-10
BA000031_1968 1/1 461 530 .. 1 87 [] 33.7 2.4e-09

Alignments of top-scoring domains:
BA000031_1755: domain 1 of 1, from 394 to 459: score 100.0, E = 4.1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++++g +e+L + t+l++ q
BA000031_1 394 AKSSFLANMSHEIRTPLNGVIGISEVLAD---------TPLTATQ-- 429

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ti+ +++ ll+Lind+Ld+s+ie+g
BA000031_1 430 ----------RDYVDTIETSSQLLLSLINDVLDFSKIESG 459

BA000031_2567: domain 1 of 1, from 290 to 355: score 94.3, E = 1.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ +l+ t ls q
BA000031_2 290 VKSEFLANMSHELRTPLNGVIGFTRQMLK---------TQLSNSQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+++a+ ll++ind+Ld+s++eag
BA000031_2 326 ----------TDYLQTIEKSANNLLNIINDILDFSKLEAG 355

BA000031_1069: domain 1 of 1, from 352 to 417: score 93.7, E = 2.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla+lsHE+RTP+++++g+a++Ll+ t+l++eq
BA000031_1 352 AKTAFLATLSHEIRTPMNGVLGTAQILLK---------TPLTDEQ-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+t++++++++ L+n++Ld+s+ie+g
BA000031_1 388 ----------RKHLSTLYDSGDHMMTLLNEILDYSKIEQG 417

BA000031_1547: domain 1 of 1, from 214 to 279: score 89.7, E = 3.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefla++sHE+RTPL++++g++++L+ ++ls+eq
BA000031_1 214 SKSEFLAMMSHEIRTPLNSVLGMLDILRQ---------STLSDEQ-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ ++ +ae ll++i+d+Ldls+ie+g
BA000031_1 250 ----------FDALNQMECSAELLLAIISDILDLSKIESG 279

BA000031_1876: domain 1 of 1, from 204 to 269: score 82.4, E = 4.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ef+a++ HELRTPL++++g a+lL + t l+e+q
BA000031_1 204 ATKEFVAMINHELRTPLNGVLGSADLLSK---------TQLGEDQ-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl ++++++ l+ +indlLd+s++ ag
BA000031_1 240 ----------RQYLGNLIQSGDLLRVIINDLLDFSKMNAG 269

BA000031_0570: domain 1 of 1, from 205 to 272: score 76.6, E = 1.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+an+sHELRTP+t+++gy+e+ ++ +++
BA000031_0 205 MRRNFFANVSHELRTPMTVLQGYLEMTED---------PDMIVGP-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++ ++++r+++L+n+lL+ls+iea
BA000031_0 241 --------MWTKAHGVMTEQLNRMNSLVNQLLTLSKIEAA 272

BA000031_2478: domain 1 of 1, from 459 to 527: score 74.7, E = 6.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+ sHELRTPL+++ g ae+L +++ + ++ q
BA000031_2 459 LKDEFLATTSHELRTPLHGMVGIAETLVSGAN------GVIPASQ-- 497

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+++++rl +L++dlLd+ +++ g
BA000031_2 498 ----------KYQLDIIIKSGQRLANLVDDLLDYHKMRYG 527

BA000031_0487: domain 1 of 1, from 282 to 347: score 69.1, E = 2.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ + l+eeq
BA000031_0 282 DKTTFISTISHELRTPLNGIVGLSRMLLD---------SQLTEEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +ti +a l ++ nd+ d+ + +
BA000031_0 318 ----------RKHMQTINVSAITLGNIFNDIIDMDKFDRR 347

BA000031_1984: domain 1 of 1, from 224 to 289: score 63.8, E = 7.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPLt+++g ++lL + ++ ++ q
BA000031_1 224 REQAFARYASHELRTPLTVMKGSSSLLAR---------SPSTPFQ-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +i++++++++ +++ lL l r e +
BA000031_1 260 ----------ERQIGRIQDATQQMSTMVDALLGLVRYERN 289

BA000031_0362: domain 1 of 1, from 231 to 297: score 61.5, E = 3.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef ++++HEL+TPLt I + +++l + +++e+
BA000031_0 231 RLSEFSSDIAHELKTPLTNITTQNQVILG---------ACRTSEE-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++++ + l+e++r+ + indlL ++++e+
BA000031_0 267 ---------YQDAIASTLEELNRITKTINDLLYIAKAENK 297

BA000031_1735: domain 1 of 1, from 260 to 325: score 59.3, E = 1.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++++HEL+TPLt +r+++e +le ++eq+
BA000031_1 260 REKRFTRAAAHELKTPLTILRLNVENALE----------SNDPEQL- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ il+ +er +rLi +lL+l++ ++
BA000031_1 296 ----------RGDLHNILQGIERTDRLIHQLLTLAKVDSL 325

BA000031_0119: domain 1 of 1, from 129 to 194: score 58.7, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++l+HE+++PL ++rg+a+lL++ l+++ +
BA000031_0 129 AAKLLVRGLAHEIKNPLGGLRGAAQLLEK----------MLPDPSL- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL + +
BA000031_0 165 ----------TEYTHIIIEQADRLRALVDRLLGPQKPGKK 194

BA000031_2874: domain 1 of 1, from 788 to 853: score 57.0, E = 6.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+L +PL+a r++a+ L e ++++e+
BA000031_2 788 SKSRFLAAVSHDLMQPLNAARLFASSLSE---------VAKDSET-- 823

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ i++++ ++Li dlLd+sr+e+g
BA000031_2 824 ----------RKLSAHIESALGAAEDLIGDLLDISRLESG 853

BA000031_2252: domain 1 of 1, from 122 to 188: score 55.8, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H+ RTPL++ ++ya+ L + ++l++ +r
BA000031_2 122 SLGRMVASLAHQVRTPLSSAMLYASNLGA---------PNLPPATR- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ + ++ l++++nd+L +++ + +
BA000031_2 159 ----------ERFQSKLMDRLHDLEKQVNDMLLFAKGGDN 188

BA000031_2859: domain 1 of 1, from 248 to 310: score 54.0, E = 4.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELR PLt +r+++ l+ + ++++
BA000031_2 248 GQQRLLSDISHELRSPLTRLRMASALATR---------KQGDSPE-- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+ ea+rl+++i++lL+lsr++ +
BA000031_2 284 -------------LVRIDTEAQRLEQMISELLELSRMQVN 310

BA000031_0155: domain 2 of 2, from 222 to 282: score 46.6, E = 5.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e+
BA000031_0 222 DRALLMAGISHDLRTPLTRIRLATEMMSP--------------ED-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i++++e ++++i++++d+ + +
BA000031_0 253 ----------SYLAEGIISDTEECNEIISQFMDYLKPVNK 282

BA000031_0915: domain 1 of 1, from 372 to 440: score 45.1, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a++sHEL++PL+aIr +ae + +l ++ + +
BA000031_0 372 VLGQMSASISHELNNPLAAIRSFAENGKLFL-------QKEKYDRV- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l +i ++r+ ++ ++l+ +++ +g
BA000031_0 411 ----------EDNLTRISALTDRMANISQQLRSFAKKASG 440

BA000031_2010: domain 1 of 1, from 353 to 422: score 41.5, E = 1.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e ++l+HEL++PL+aIr y+e l +l +++ e++
BA000031_2 353 IVGEIGSSLAHELNQPLAAIRNYSEGGLLRLA------KKRPHEDI- 392

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ++er +++i++l++l r ++
BA000031_2 393 ----------VPVLEKIQGQVERADAIIQRLRTLIRKRSV 422

BA000031_1503: domain 1 of 1, from 448 to 515: score 41.2, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g++el+ el +e +
BA000031_1 448 ALGELTAGIAHEINNPTAVILGNVELIHFEL-------GEDASRV-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ i+ +++r++++ + lL++sr +
BA000031_1 486 ----------QEEIDAIHAQIDRIRNITRSLLQYSRQGGV 515

BA000031_1201: domain 1 of 1, from 335 to 398: score 36.5, E = 3.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ ++++HE+++PL+aI+ y++ ++++++ + ++e++
BA000031_1 335 IVGELGSSIAHEINQPLAAIKNYSQGAKMRME------QGTTPEEM- 374

peLRledpeyreyletilreaerllrLindlLdl<-*
++e+i++++ + ++++++l+ l
BA000031_1 375 ----------LPIIEKIQQQVTSASDIVQRLRSL 398

BA000031_1968: domain 1 of 1, from 461 to 530: score 33.7, E = 2.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++HE+R+PL+ +++ e+L+ ++d+++s++++
BA000031_1 461 QSRALANSIAHEMRNPLAQVQLQFEALKQ------HIDSNASDDKI- 500

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +e+ + +++r ++Li+ +L +
BA000031_1 501 ----------RSDIEKGQAAIQRGRQLIDIILREVSDTSA 530


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 9 0|=
-14 38 0|====
-13 81 2|*========
-12 162 70|======*==========
-11 297 365|============================== *
-10 529 677|===================================================== *
-9 564 699|========================================================= *
-8 467 523|=============================================== *
-7 369 330|================================*====
-6 212 189|==================*===
-5 135 104|==========*===
-4 80 55|=====*==
-3 49 29|==*==
-2 25 15|=*=
-1 19 8|*=
0 8 4|*
1 4 2|*
2 5 1|*
3 0 0|
4 0 0|
5 1 0|=
> 6 26 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 257.1940
P(chi-square) = 0

Total sequences searched: 3080

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: