hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: BA000031.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000031_1908 CDS_1994117-1992753 64.0 1.1e-18 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000031_1908 1/1 250 315 .. 1 70 [] 64.0 1.1e-18
Alignments of top-scoring domains:
BA000031_1908: domain 1 of 1, from 250 to 315: score 64.0, E = 1.1e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
E +++ARELHD++ Q L + k +l+l ++l +++ +++ +ld
BA000031_1 250 EKKHLARELHDGINQLLVSSKCHLDLMSHRL--QDE--KLKSHLDKS 292
relarealaevRrllgdLRpaal<-*
++ + +a++evR++ ++LRp+al
BA000031_1 293 QRSLVTAINEVRHISHQLRPSAL 315
Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 78 0|========
-13 117 0|===========
-12 154 34|===*==========
-11 198 282|================== *
-10 568 655|==================================================== *
-9 625 743|========================================================= *
-8 446 573|========================================= *
-7 314 360|============================= *
-6 213 203|==================*=
-5 167 109|=========*======
-4 78 57|=====*==
-3 51 29|==*==
-2 29 15|=*=
-1 20 7|*=
0 6 3|*
1 6 1|*
2 4 1|*
> 3 5 -|=
% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 592.9928
P(chi-square) = 0
Total sequences searched: 3080
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
