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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Vibrio parahaemolyticus RIMD 2210633  

Data for BA000032  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BA000032.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000032_0009 CDS_8458-10356 100.2 2e-28 1
BA000032_1229 CDS_1303925-1301277 96.7 2.1e-27 1
BA000032_0675 CDS_694458-697424 91.1 7.6e-26 2
BA000032_1220 CDS_1295259-1292683 86.2 1.8e-24 1
BA000032_1130 CDS_1197375-1194754 79.4 1.6e-22 1
BA000032_1100 CDS_1161301-1158944 79.0 2.1e-22 1
BA000032_0736 CDS_767025-770690 71.7 2.4e-20 1
BA000032_1433 CDS_1509705-1508659 64.4 2.9e-18 1
BA000032_0149 CDS_143845-145221 60.0 5.1e-17 1
BA000032_1277 CDS_1356185-1357471 56.9 3.8e-16 1
BA000032_1515 CDS_1622586-1621213 46.3 3.9e-13 1
BA000032_0826 CDS_858443-860818 43.2 2.9e-12 1
BA000032_1075 CDS_1135987-1134746 39.7 2.8e-11 1
BA000032_0920 CDS_953699-952245 29.0 3e-08 1
BA000032_1731 CDS_1849594-1851444 29.0 3.1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000032_0009 1/1 243 308 .. 1 87 [] 100.2 2e-28
BA000032_1229 1/1 382 447 .. 1 87 [] 96.7 2.1e-27
BA000032_0675 2/2 469 534 .. 1 87 [] 90.3 1.3e-25
BA000032_1220 1/1 481 546 .. 1 87 [] 86.2 1.8e-24
BA000032_1130 1/1 374 439 .. 1 87 [] 79.4 1.6e-22
BA000032_1100 1/1 269 334 .. 1 87 [] 79.0 2.1e-22
BA000032_0736 1/1 667 732 .. 1 87 [] 71.7 2.4e-20
BA000032_1433 1/1 123 191 .. 1 87 [] 64.4 2.9e-18
BA000032_0149 1/1 235 299 .. 1 87 [] 60.0 5.1e-17
BA000032_1277 1/1 211 276 .. 1 87 [] 56.9 3.8e-16
BA000032_1515 1/1 257 320 .. 1 87 [] 46.3 3.9e-13
BA000032_0826 1/1 568 636 .. 1 87 [] 43.2 2.9e-12
BA000032_1075 1/1 220 286 .. 1 87 [] 39.7 2.8e-11
BA000032_0920 1/1 276 343 .. 1 87 [] 29.0 3e-08
BA000032_1731 1/1 376 444 .. 1 87 [] 29.0 3.1e-08

Alignments of top-scoring domains:
BA000032_0009: domain 1 of 1, from 243 to 308: score 100.2, E = 2e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla++sHE+RTP+++I+g a+lL + t+l+++q
BA000032_0 243 KKSEFLATMSHEIRTPMNGIIGVASLLSD---------TKLDPQQ-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e+i++++++l +i+d+Ld+s+ eag
BA000032_0 279 ----------KEFVEIIDNSSQSLMTIIDDILDFSKVEAG 308

BA000032_1229: domain 1 of 1, from 382 to 447: score 96.7, E = 2.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++e+L +els+ q
BA000032_1 382 AKSVFLANMSHEIRTPLNGIMGMTEILSQ---------SELSPHQ-- 417

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ i+ +++ ll+L+nd+Ldls+ie+g
BA000032_1 418 ----------QEVVDDIDTSSHTLLALLNDILDLSKIESG 447

BA000032_0675: domain 2 of 2, from 469 to 534: score 90.3, E = 1.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+a lL + + l++ q
BA000032_0 469 AKSAFLATMSHEIRTPMNGVLGTARLLMD---------SGLNPIQ-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y e+i r+++ ll+++nd+Ld+s+ieag
BA000032_0 505 ----------KRYAEIINRSGKTLLAILNDVLDYSKIEAG 534

BA000032_1220: domain 1 of 1, from 481 to 546: score 86.2, E = 1.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +fla +sHE+RTP+++I+g a+lL++ + eeq
BA000032_1 481 ARADFLAKMSHEIRTPINGILGVAQLLKD---------SVEAEEQ-- 516

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++++e+ll+ +nd+Ld+s+ie+g
BA000032_1 517 ----------KNQIDVLRHSGEHLLAVLNDILDFSKIEQG 546

BA000032_1130: domain 1 of 1, from 374 to 439: score 79.4, E = 1.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++aI+g +e+Lle e e
BA000032_1 374 AKSEFLANMSHEIRTPMNAIMGISEILLE---------NENRREP-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l ++++a+ l +ind+Ld+s+ eag
BA000032_1 410 ----------RELLLLLHKSANNLVTIINDILDYSKVEAG 439

BA000032_1100: domain 1 of 1, from 269 to 334: score 79.0, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTP+++++g ++l+ e +++ + +
BA000032_1 269 AKSSFLAAMSHELRTPMNGVLGISQLIAE---------ETKEPVT-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++il+++++l ++nd+Ld+s+ e++
BA000032_1 305 ----------KEHIKVILDSGQHLMTILNDILDFSKVEEN 334

BA000032_0736: domain 1 of 1, from 667 to 732: score 71.7, E = 2.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ fla++sHELRTPL+a g ++lL + +++ +
BA000032_0 667 ARENFLATMSHELRTPLSAAHGILDLLNR----------QVTADSN- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ + r++++l+ L++++Ld+s++eag
BA000032_0 703 ----------RELIAQAMRSLNHLNVLVDEVLDYSKLEAG 732

BA000032_1433: domain 1 of 1, from 123 to 191: score 64.4, E = 2.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L e++ ++l++ +r
BA000032_1 123 LQNSILLSVSHDLRTPLATIIGTLTTLNEYM-------PKLNDLER- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++ +e++rl + i++lL+ +++++g
BA000032_1 162 ----------KELLDSATSESHRLHQYIENLLQATKLQHG 191

BA000032_0149: domain 1 of 1, from 235 to 299: score 60.0, E = 5.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++++sHELRTPL+ + ++lL++ +e +
BA000032_0 235 KQRLLIRDVSHELRTPLARQNLVLHLLRK----------RVGESE-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ ++++ea+ l++Li+d+L++sr+e+
BA000032_0 270 ----------QELVTRLEDEAKELNHLISDILEFSRLENA 299

BA000032_1277: domain 1 of 1, from 211 to 276: score 56.9, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++HELRTP+ ++ a+lL + + l+e+q
BA000032_1 211 SNKMLTNAVAHELRTPIFRLQWQADLLAD---------SSLNEQQ-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+++i ++++ +++++++lL ++++e +
BA000032_1 247 ----------TKYVNSIVEDIDEMEEMVEELLYYAKMERP 276

BA000032_1515: domain 1 of 1, from 257 to 320: score 46.3, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l lsH+L+TPL++++gy+e+ + ++ +++ +
BA000032_1 257 HRRQSLLQLSHDLKTPLSSVLGYLETWRL---------QHPDPDPL- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ r +e l++++ lLd ++ ea+
BA000032_1 294 -------------IEVAFRNSEKLSQQLHALLDVAKQEAP 320

BA000032_0826: domain 1 of 1, from 568 to 636: score 43.2, E = 2.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HEL++PL+a+++y+ ++++l+ +e +e+
BA000032_0 568 VVGQTMTSLAHELNQPLNAMSTYLYSARMFLE------QESPEKV-- 606

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + i+ a r++++in l++++r +g
BA000032_0 607 ----------GESITHIEGLATRMSKIINSLRQFARKPEG 636

BA000032_1075: domain 1 of 1, from 220 to 286: score 39.7, E = 2.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef + +sHELRTP+ +I g +++L + + + +
BA000032_1 220 REQEFSRFASHELRTPIMVIAGSTDILSR---------VPDQPRVA- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++ + e ++ L + +L l + +
BA000032_1 257 ----------QKAIARMQAACEDMRVLTEAFLLLGKEKIE 286

BA000032_0920: domain 1 of 1, from 276 to 343: score 29.0, E = 3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l l HELRTP++++++++e ++e+ ++l+e
BA000032_0 276 SRMLVLQILTHELRTPIASLSLTVEGFRREF-------EHLPESV-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ ++++rl++L + d+ + +++
BA000032_0 314 ----------YDEFRRLCEDTRRLRQLAEASKDYLQSDNQ 343

BA000032_1731: domain 1 of 1, from 376 to 444: score 29.0, E = 3.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ a++ HE+++PL+a+r+y+e ++ ls e
BA000032_1 376 LLGELSASINHEINQPLAALRTYTENSQR----------LLSMER-- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p++++ l+++l+ e + + i +l ++r +
BA000032_1 411 ------YPMVADNLNKMLSLNETIAEVIARLKVFTRKTSH 444


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 3 0|=
-14 26 0|=====
-13 49 1|*========
-12 93 40|======*=========
-11 159 207|=========================== *
-10 285 385|================================================ *
-9 320 397|====================================================== *
-8 286 297|================================================ *
-7 225 187|===============================*======
-6 110 108|=================*=
-5 77 59|=========*===
-4 42 31|=====*=
-3 25 16|==*==
-2 11 8|=*
-1 9 4|*=
0 5 2|*
1 4 1|*
2 4 0|=
3 0 0|
4 0 0|
> 5 19 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 143.9403
P(chi-square) = 6.556e-26

Total sequences searched: 1752

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: