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Classification of phyla is from NCBI page
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106 projects found  

3 accessions found for Corynebacterium efficiens YS-314  

Data for BA000035  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BA000035.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000035_0770 CDS_821335-822804 76.1 2.3e-21 1
BA000035_0424 CDS_458760-460001 73.0 1.7e-20 1
BA000035_0234 CDS_258412-256937 67.5 6.2e-19 1
BA000035_2489 CDS_2661500-2660073 58.3 2.6e-16 1
BA000035_0947 CDS_1009293-1010759 51.4 2.3e-14 1
BA000035_0279 CDS_305606-306802 44.3 2.4e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000035_0770 1/1 243 310 .. 1 87 [] 76.1 2.3e-21
BA000035_0424 1/1 156 222 .. 1 87 [] 73.0 1.7e-20
BA000035_0234 1/1 261 325 .. 1 87 [] 67.5 6.2e-19
BA000035_2489 1/1 254 318 .. 1 87 [] 58.3 2.6e-16
BA000035_0947 1/1 253 325 .. 1 87 [] 51.4 2.3e-14
BA000035_0279 1/1 143 207 .. 1 87 [] 44.3 2.4e-12

Alignments of top-scoring domains:
BA000035_0770: domain 1 of 1, from 243 to 310: score 76.1, E = 2.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+l+ +++ +els+
BA000035_0 243 LQRQFTSDVSHELRTPLTTVRMAADLIADNQ-------EELSSVA-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e + re++r ++L+ndlL++sr +ag
BA000035_0 281 ----------RRASELMVRELDRFESLLNDLLEISRHDAG 310

BA000035_0424: domain 1 of 1, from 156 to 222: score 73.0, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHEL+TP+ ++ ++ae+L e + ++eq+
BA000035_0 156 ARRDFVANVSHELKTPVGGMALLAEALME---------AVDDPEQV- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++rea+r+ ++in+l ls+++
BA000035_0 193 ----------EYFGARLHREAHRMADMINELISLSKLQGA 222

BA000035_0234: domain 1 of 1, from 261 to 325: score 67.5, E = 6.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++ HELRTP+t++rg +elL+ ++e+r
BA000035_0 261 DQRQFVDDAGHELRTPITVVRGQLELLES-----------SPPEER- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e + e++r+ r++ndlL+l+ +++g
BA000035_0 296 ----------TRSIELATTELDRMARMVNDLLTLAVADSG 325

BA000035_2489: domain 1 of 1, from 254 to 318: score 58.3, E = 2.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPLt+++gy+el ++ +
BA000035_2 254 QMRRFVGDASHELRTPLTSVKGYSELYHS----------GATRDA-- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ea+r++ L++dlL l+r+e +
BA000035_2 289 ----------DWVLSKISGEAQRMSVLVEDLLSLTRAEGQ 318

BA000035_0947: domain 1 of 1, from 253 to 325: score 51.4, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++s+++a++ HEL+TPLt++r+++elL + + +g+++ se++r
BA000035_0 253 RQSQLVADAGHELKTPLTSMRTNIELLMM----AsRPGSPPISEQDR 295

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +l + e ++ Li dl dl+r e+
BA000035_0 296 -----------HELECDVLAQMEEMSTLIGDLVDLTREEET 325

BA000035_0279: domain 1 of 1, from 143 to 207: score 44.3, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l++l+HE+ TPL+++ y++ L++++ +++ ++
BA000035_0 143 VRRQMLSDLAHEMGTPLSVLAVYLDGLQDGV-------IDWNTATQ- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i +++ rl rL +d+ + sr ++
BA000035_0 182 --------------KVISDQLSRLTRLTEDMDEVSRVQEH 207


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 2 0|=
-14 21 0|===
-13 41 2|*====
-12 132 67|======*=======
-11 304 348|=============================== *
-10 545 646|======================================================= *
-9 567 668|========================================================= *
-8 468 500|=============================================== *
-7 365 315|===============================*=====
-6 224 181|==================*====
-5 107 99|=========*=
-4 72 53|=====*==
-3 36 28|==*=
-2 17 14|=*
-1 20 7|*=
0 4 4|*
1 6 2|*
2 2 1|*
3 1 0|=
4 1 0|=
> 5 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 148.6481
P(chi-square) = 2.815e-26

Total sequences searched: 2942

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: