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Classification of phyla is from NCBI page
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Data for BA000036  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BA000036.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000036_0755 CDS_791512-793011 74.4 7.4e-21 1
BA000036_0403 CDS_425934-427175 74.0 9.5e-21 1
BA000036_0273 CDS_291243-289774 71.3 5.4e-20 1
BA000036_2606 CDS_2774099-2772642 57.8 3.8e-16 1
BA000036_2663 CDS_2830780-2831898 47.7 2.6e-13 1
BA000036_0875 CDS_928884-930251 43.9 3.3e-12 1
BA000036_2964 CDS_3167647-3166448 43.0 5.8e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000036_0755 1/1 252 319 .. 1 87 [] 74.4 7.4e-21
BA000036_0403 1/1 156 222 .. 1 87 [] 74.0 9.5e-21
BA000036_0273 1/1 258 322 .. 1 87 [] 71.3 5.4e-20
BA000036_2606 1/1 266 330 .. 1 87 [] 57.8 3.8e-16
BA000036_2663 1/1 147 211 .. 1 87 [] 47.7 2.6e-13
BA000036_0875 1/1 222 294 .. 1 87 [] 43.9 3.3e-12
BA000036_2964 1/1 143 207 .. 1 87 [] 43.0 5.8e-12

Alignments of top-scoring domains:
BA000036_0755: domain 1 of 1, from 252 to 319: score 74.4, E = 7.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+l+ + +++els+
BA000036_0 252 LQRQFTSDVSHELRTPLTTVRMAADLIAD-------SEDELSPGA-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + + re++r ++L++dlL++sr +ag
BA000036_0 290 ----------RRASQLMNRELDRFESLLSDLLEISRHDAG 319

BA000036_0403: domain 1 of 1, from 156 to 222: score 74.0, E = 9.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHEL+TP+ ++ ++ae+L e + ++eq+
BA000036_0 156 ARRDFVANVSHELKTPVGGMALLAEALME---------SSDDPEQV- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++rea+r+ ++in+l ls+++
BA000036_0 193 ----------EYFGSRLHREAHRMADMINELISLSKLQGA 222

BA000036_0273: domain 1 of 1, from 258 to 322: score 71.3, E = 5.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++ HELRTP+t++rg +elL + + +eeq
BA000036_0 258 DQRQFVDDAGHELRTPITVVRGQLELLAT----------TPPEEQ-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e + e++r++r++ndlL+l+ +++g
BA000036_0 293 ----------ARSIELATTELDRMSRMVNDLLTLAVADSG 322

BA000036_2606: domain 1 of 1, from 266 to 330: score 57.8, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPLt+++g++el ++++
BA000036_2 266 QMRRFVGDASHELRTPLTSVKGFTELYSS----------GATDDA-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i ea+r++ L++dlL l+r+e +
BA000036_2 301 ----------NWVMSKIGGEAQRMSVLVEDLLSLTRAEGQ 330

BA000036_2663: domain 1 of 1, from 147 to 211: score 47.7, E = 2.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsHE++TPL++++ y++ L++++ e+++++
BA000036_2 147 LRRNMLSDLSHEMNTPLSVLLVYVDGLQDGM-------VEWDADT-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ rl+rL +dl d sr+++
BA000036_2 185 -------------HAVFAEQLGRLSRLTSDLDDVSRAQEH 211

BA000036_0875: domain 1 of 1, from 222 to 294: score 43.9, E = 3.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++s+++a++ HEL+TPLt++r+++elLl+ + g + + e++
BA000036_0 222 RQSQLVADAGHELKTPLTSMRTNIELLLM----AtNSGGSGIPKEEL 264

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +l + +++Li dl dl+r e+
BA000036_0 265 -----------DGLQRDVLAQMTEMSDLIGDLVDLAREETA 294

BA000036_2964: domain 1 of 1, from 143 to 207: score 43.0, E = 5.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l++l+HE+ TPL+++ y++ L++++ +++ +
BA000036_2 143 VRRQMLSDLAHEMGTPLSVLTVYLDGLQDGV-------VDWNNAT-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ rl rL +d+ d sr+++
BA000036_2 181 -------------HTIMADQLTRLTRLMEDIDDVSRAQEH 207


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 2 0|=
-14 15 0|==
-13 56 2|*=====
-12 149 70|======*=======
-11 353 367|=================================*
-10 529 681|================================================= *
-9 617 703|========================================================= *
-8 507 526|===============================================*
-7 372 332|==============================*===
-6 212 191|=================*==
-5 126 104|=========*==
-4 69 56|=====*=
-3 44 29|==*=
-2 14 15|=*
-1 14 8|*=
0 5 4|*
1 3 2|*
2 2 1|*
3 1 0|=
4 1 0|=
5 0 0|
> 6 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 158.0815
P(chi-square) = 3.309e-28

Total sequences searched: 3099

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: