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Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Vibrio vulnificus YJ016  

Data for BA000037  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BA000037.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000037_1157 CDS_1171277-1173433 95.2 1e-26 1
BA000037_2264 CDS_2285343-2282926 94.8 1.3e-26 1
BA000037_2823 CDS_2882203-2884989 94.1 2e-26 1
BA000037_1628 CDS_1675053-1672765 86.6 2.8e-24 1
BA000037_0724 CDS_727533-728831 82.5 4e-23 1
BA000037_2733 CDS_2773205-2776594 81.2 9.4e-23 1
BA000037_1668 CDS_1723881-1722172 77.8 8.2e-22 1
BA000037_2081 CDS_2088526-2086811 75.1 4.8e-21 1
BA000037_0141 CDS_151234-153030 75.1 4.8e-21 1
BA000037_0644 CDS_639275-641617 73.9 1.1e-20 1
BA000037_3129 CDS_3211788-3208318 59.6 1.2e-16 1
BA000037_0197 CDS_210261-209209 59.2 1.6e-16 1
BA000037_2484 CDS_2519324-2518290 56.0 1.3e-15 1
BA000037_2406 CDS_2435907-2437541 55.3 2e-15 1
BA000037_0237 CDS_244169-245467 50.7 4e-14 2
BA000037_3114 CDS_3194173-3195561 50.1 6.1e-14 1
BA000037_1065 CDS_1066251-1067507 49.6 8.2e-14 1
BA000037_1101 CDS_1108569-1106752 46.5 6.2e-13 1
BA000037_1711 CDS_1768226-1766100 42.4 8.8e-12 1
BA000037_2223 CDS_2242723-2244633 41.5 1.6e-11 1
BA000037_1449 CDS_1484260-1482317 29.0 5.8e-08 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000037_1157 1/1 265 331 .. 1 87 [] 95.2 1e-26
BA000037_2264 1/1 352 417 .. 1 87 [] 94.8 1.3e-26
BA000037_2823 1/1 290 355 .. 1 87 [] 94.1 2e-26
BA000037_1628 1/1 239 304 .. 1 87 [] 86.6 2.8e-24
BA000037_0724 1/1 205 272 .. 1 87 [] 82.5 4e-23
BA000037_2733 1/1 459 527 .. 1 87 [] 81.2 9.4e-23
BA000037_1668 1/1 209 274 .. 1 87 [] 77.8 8.2e-22
BA000037_2081 1/1 207 272 .. 1 87 [] 75.1 4.8e-21
BA000037_0141 1/1 222 287 .. 1 87 [] 75.1 4.8e-21
BA000037_0644 1/1 282 347 .. 1 87 [] 73.9 1.1e-20
BA000037_3129 1/1 801 866 .. 1 87 [] 59.6 1.2e-16
BA000037_0197 1/1 131 196 .. 1 87 [] 59.2 1.6e-16
BA000037_2484 1/1 122 188 .. 1 87 [] 56.0 1.3e-15
BA000037_2406 1/1 314 380 .. 1 87 [] 55.3 2e-15
BA000037_3114 1/1 244 306 .. 1 87 [] 50.1 6.1e-14
BA000037_1065 1/1 220 286 .. 1 87 [] 49.6 8.2e-14
BA000037_0237 2/2 222 282 .. 1 87 [] 47.3 3.6e-13
BA000037_1101 1/1 382 450 .. 1 87 [] 46.5 6.2e-13
BA000037_1711 1/1 476 543 .. 1 87 [] 42.4 8.8e-12
BA000037_2223 1/1 384 453 .. 1 87 [] 41.5 1.6e-11

Alignments of top-scoring domains:
BA000037_1157: domain 1 of 1, from 265 to 331: score 95.2, E = 1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+a++gy++l++ d+ l++++
BA000037_1 265 AKSIFLANMSHELRTPLNAVLGYTQLMKC--------DQRLTAKH-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyle+i r++e+ll+Lind+Ld+s+i+ag
BA000037_1 302 ----------HEYLEIINRSGEHLLSLINDVLDMSKIDAG 331

BA000037_2264: domain 1 of 1, from 352 to 417: score 94.8, E = 1.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla+lsHE+RTP+++++g+a++Ll+ t+l+eeq
BA000037_2 352 AKTAFLATLSHEIRTPMNGVLGTAQILLK---------TPLNEEQ-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+t++++++++ L+n++Ld+s+ie+g
BA000037_2 388 ----------RKHLKTLYDSGDHMMTLLNEILDYSKIEQG 417

BA000037_2823: domain 1 of 1, from 290 to 355: score 94.1, E = 2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ +l+ t l+ q
BA000037_2 290 VKSEFLANMSHELRTPLNGVIGFTRQMLK---------TQLTNSQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+++a+ ll++ind+Ld+s++eag
BA000037_2 326 ----------TDYLQTIEKSANNLLNIINDILDFSKLEAG 355

BA000037_1628: domain 1 of 1, from 239 to 304: score 86.6, E = 2.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sHE+RTP+++++g++ +L e t+l+ q
BA000037_1 239 SKSRFLASMSHEIRTPMNGVLGLLGILGE---------TKLDNHQ-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++t+++++e ll++ind+Ld+sr+ea+
BA000037_1 275 ----------QNLVHTAKESGELLLSIINDILDFSRMEAN 304

BA000037_0724: domain 1 of 1, from 205 to 272: score 82.5, E = 4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+an+sHELRTP+t+++gy+e+ ++ +++
BA000037_0 205 MRRNFFANVSHELRTPMTVLQGYLEMTED---------PDMLVGP-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +++ ++++r+++L+n+lL+ls+iea
BA000037_0 241 --------MWGKAHRVMTEQLNRMNSLVNQLLTLSKIEAS 272

BA000037_2733: domain 1 of 1, from 459 to 527: score 81.2, E = 9.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+ sHELRTPL++++g ae+L +++ ++l++ q
BA000037_2 459 LKDEFLATTSHELRTPLHGMIGIAETLISGAN------GPLPSNQ-- 497

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i+++++rl L++dlLd+ +++ g
BA000037_2 498 ----------RYQLDIIIKSGQRLATLVDDLLDYHKMRYG 527

BA000037_1668: domain 1 of 1, from 209 to 274: score 77.8, E = 8.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTPL++++g++++L+ +++s+ ++
BA000037_1 209 AKSEFLAMMSHELRTPLNSVLGMLDVLKQ---------SDMSAGHI- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ ++++a ll++i+d+Ldls+ie+g
BA000037_1 246 -----------NLLSHMESSAGLLLAIISDILDLSKIESG 274

BA000037_2081: domain 1 of 1, from 207 to 272: score 75.1, E = 4.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ef+a++ HELRTPL++++g aelL + t l++eq
BA000037_2 207 ATKEFVAMINHELRTPLNGVLGSAELLGN---------TYLNDEQ-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ +++ +e l+ +indlLd+s++ ag
BA000037_2 243 ----------QLYLRNLRQGGELLRVIINDLLDFSKMNAG 272

BA000037_0141: domain 1 of 1, from 222 to 287: score 75.1, E = 4.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+++lL +++++
BA000037_0 222 AKSMFLATMSHEIRTPMNGVIGMTQLLIS---------DNKDPSI-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+t+l+++e+l in++Ld+s +e+g
BA000037_0 258 ----------QTHLDTLLESGEHLMVVINEILDFSNLEQG 287

BA000037_0644: domain 1 of 1, from 282 to 347: score 73.9, E = 1.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t l++eq
BA000037_0 282 DKTTFISTISHELRTPLNGIVGLSRMLLD---------TRLTDEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y +ti +a l ++ nd+ d+ + +
BA000037_0 318 ----------RKYMQTINVSAITLGNIFNDIIDMDKFDRR 347

BA000037_3129: domain 1 of 1, from 801 to 866: score 59.6, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+L +PL+a r++a+ L e ++++e
BA000037_3 801 SKSRFLAAVSHDLMQPLNAARLFASSLSE---------VAKDDES-- 836

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + i++++ ++Li dlLd+sr+e+g
BA000037_3 837 ----------RKLAHHIESALGAAEDLIGDLLDISRLESG 866

BA000037_0197: domain 1 of 1, from 131 to 196: score 59.2, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++l+HE+++PL ++rg+a+lL++ l+++ +
BA000037_0 131 AAKLLVRGLAHEIKNPLGGLRGAAQLLEK----------MLPDPSL- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL + +
BA000037_0 167 ----------TEYTQIIIEQADRLRALVDRLLGPQKPGKK 196

BA000037_2484: domain 1 of 1, from 122 to 188: score 56.0, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H+ RTPL++ ++ya+ L + ++l+ +r
BA000037_2 122 SLGRMVASLAHQVRTPLSSAMLYASNLSA---------PNLPNTTR- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ + ++ l++++nd+L +++ + +
BA000037_2 159 ----------ERFQSKLMDRLQDLEKQVNDMLLFAKGGDN 188

BA000037_2406: domain 1 of 1, from 314 to 380: score 55.3, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ +++H+LRTPL +r+++e+L++ ++ s+ q+
BA000037_2 314 RQRELTNAVAHDLRTPLYRLRFAIEMLED---------PHTSDAQK- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + ++ +++ l++Lin+ L lsr
BA000037_2 351 ----------EKYQRALHTSIDDLDHLINQNLLLSRYNRI 380

BA000037_3114: domain 1 of 1, from 244 to 306: score 50.1, E = 6.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELR PLt +r++ l+ + + +
BA000037_3 244 GQQRLLSDISHELRSPLTRLRMANALATR---------KQGESNE-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ ea+rl+++i++lL+lsr++ +
BA000037_3 280 -------------LQRIDTEAQRLEQMISELLELSRMQMN 306

BA000037_1065: domain 1 of 1, from 220 to 286: score 49.6, E = 8.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef + +sHELRTP+ +I+g a++L + e ++ +
BA000037_1 220 REQEFSRFASHELRTPIMVIQGSADILSR---------VEGQPQVA- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++++++ + L + +L l + e +
BA000037_1 257 ----------QKAIRRLHQAGQEMKVLTETFLLLGKSEIE 286

BA000037_0237: domain 2 of 2, from 222 to 282: score 47.3, E = 3.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e+
BA000037_0 222 DRALLMAGISHDLRTPLTRIRLATEMMSP--------------ED-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i++++e ++++i++++d+ + +
BA000037_0 253 ----------SYLAEGIISDTEECNEIISQFMDYLKPVNT 282

BA000037_1101: domain 1 of 1, from 382 to 450: score 46.5, E = 6.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ a++sHEL++PL+aIr +a+ + +l+ e+ +
BA000037_1 382 VIGQMSASISHELNNPLAAIRSFADNGRLFLE------KEKYPRV-- 420

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++i +er+ ++ ++l+ ++r ag
BA000037_1 421 ----------DENLSRISALTERMAKISQQLRSFARKSAG 450

BA000037_1711: domain 1 of 1, from 476 to 543: score 42.4, E = 8.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g++el++ el +e +
BA000037_1 476 ALGELTAGIAHEINNPTAVILGNVELIRFEL-------GEDAARV-- 513

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +et+ +++r++++ + lL++sr +
BA000037_1 514 ----------EEEIETVMAQIDRIRNITRSLLQYSRQGGV 543

BA000037_2223: domain 1 of 1, from 384 to 453: score 41.5, E = 1.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ ++l+HEL++PL+aIr y+e l +l +++ +++
BA000037_2 384 IVGELGSSLAHELNQPLAAIRNYSEGVLLRLA------KNRPNQEI- 423

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+r++er ++++++l+ l + ++
BA000037_2 424 ----------VPVLEKIQRQVERADAIVSRLRNLIKKRSV 453


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 7 0|=
-14 33 0|====
-13 89 2|*========
-12 204 74|=======*=============
-11 332 386|================================== *
-10 538 717|====================================================== *
-9 572 740|==========================================================*
-8 476 554|================================================ *
-7 404 349|==================================*======
-6 245 201|====================*====
-5 131 110|==========*===
-4 83 59|=====*===
-3 57 31|===*==
-2 27 16|=*=
-1 15 8|*=
0 10 4|*
1 6 2|*
2 4 1|*
3 1 0|=
4 2 0|=
5 0 0|
6 1 0|=
7 0 0|
> 8 25 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 391.6383
P(chi-square) = 0

Total sequences searched: 3262

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: