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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

3 accessions found for Vibrio vulnificus YJ016  

Data for BA000037  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: BA000037.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000037_2106 CDS_2115413-2114058 68.3 6.3e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000037_2106 1/1 250 315 .. 1 70 [] 68.3 6.3e-20

Alignments of top-scoring domains:
BA000037_2106: domain 1 of 1, from 250 to 315: score 68.3, E = 6.3e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
E +++ARELHD++ Q L + k +lel+++ + +++ ++ +ld
BA000037_2 250 EKKHLARELHDGINQLLVSSKCHLELLAHKV--QDP--SLKVHLDKS 292

relarealaevRrllgdLRpaal<-*
++ + +a++evR++ ++LRp+al
BA000037_2 293 QQSLTTAINEVRHISHQLRPSAL 315


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 66 0|======
-13 140 0|=============
-12 173 36|===*============
-11 235 298|====================== *
-10 581 693|===================================================== *
-9 630 787|==========================================================*
-8 496 607|============================================== *
-7 341 381|=============================== *
-6 224 216|===================*=
-5 163 115|==========*====
-4 89 60|=====*===
-3 50 31|==*==
-2 34 15|=*==
-1 15 8|*=
0 4 4|*
1 8 2|*
2 3 1|*
> 3 10 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 671.0203
P(chi-square) = 0

Total sequences searched: 3262

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: