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Classification of phyla is from NCBI page
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3 accessions found for Vibrio vulnificus YJ016  

Data for BA000038  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BA000038.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000038_0008 CDS_7436-9376 104.7 1e-29 1
BA000038_1472 CDS_1620605-1616619 103.5 2.3e-29 1
BA000038_0584 CDS_654678-657896 95.2 5.3e-27 1
BA000038_1229 CDS_1352178-1349533 92.3 3.5e-26 1
BA000038_0634 CDS_703494-706448 90.7 9.8e-26 1
BA000038_1220 CDS_1343630-1341057 79.0 2e-22 1
BA000038_0933 CDS_1024819-1028964 77.7 4.6e-22 1
BA000038_0647 CDS_721913-725584 74.5 3.7e-21 1
BA000038_1420 CDS_1574308-1576470 74.4 4.1e-21 1
BA000038_0329 CDS_370984-367253 71.0 3.8e-20 1
BA000038_1485 CDS_1635108-1636499 64.9 2e-18 1
BA000038_0112 CDS_130214-128694 57.3 2.9e-16 1
BA000038_0248 CDS_289517-288237 53.5 3.3e-15 1
BA000038_1246 CDS_1367212-1365812 47.1 2.1e-13 1
BA000038_0810 CDS_903913-902486 28.9 3.1e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000038_0008 1/1 244 309 .. 1 87 [] 104.7 1e-29
BA000038_1472 1/1 606 671 .. 1 87 [] 103.5 2.3e-29
BA000038_0584 1/1 299 364 .. 1 87 [] 95.2 5.3e-27
BA000038_1229 1/1 373 438 .. 1 87 [] 92.3 3.5e-26
BA000038_0634 1/1 484 549 .. 1 87 [] 90.7 9.8e-26
BA000038_1220 1/1 483 548 .. 1 87 [] 79.0 2e-22
BA000038_0933 1/1 679 747 .. 1 87 [] 77.7 4.6e-22
BA000038_0647 1/1 690 755 .. 1 87 [] 74.5 3.7e-21
BA000038_1420 1/1 238 303 .. 1 87 [] 74.4 4.1e-21
BA000038_0329 1/1 699 764 .. 1 87 [] 71.0 3.8e-20
BA000038_1485 1/1 237 303 .. 1 87 [] 64.9 2e-18
BA000038_0112 1/1 288 353 .. 1 87 [] 57.3 2.9e-16
BA000038_0248 1/1 210 275 .. 1 87 [] 53.5 3.3e-15
BA000038_1246 1/1 222 286 .. 1 87 [] 47.1 2.1e-13
BA000038_0810 1/1 267 334 .. 1 87 [] 28.9 3.1e-08

Alignments of top-scoring domains:
BA000038_0008: domain 1 of 1, from 244 to 309: score 104.7, E = 1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla++sHE+RTP+++I+g a+lL+e +ls+eq
BA000038_0 244 KKSEFLATMSHEIRTPMNGIIGVASLLKE---------MDLSSEQ-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e i +++e+ll++ind+Ld+s+ieag
BA000038_0 280 ----------KQYVEMINHSSESLLDIINDILDFSKIEAG 309

BA000038_1472: domain 1 of 1, from 606 to 671: score 103.5, E = 2.3e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+a+l+l+ tel++ q
BA000038_1 606 AKGDFLANMSHEIRTPMNAILGMAHLALN---------TELDPSQ-- 641

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl +i ++a+ ll +ind+Ld+s+ieag
BA000038_1 642 ----------RKYLTRINESAKNLLGIINDILDFSKIEAG 671

BA000038_0584: domain 1 of 1, from 299 to 364: score 95.2, E = 5.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTP++aI+g+++l+l+ t+l+++q
BA000038_0 299 VKSMFLANMSHEIRTPMNAIIGMSHLALK---------TDLTPKQ-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i+++a ll +ind+Ld+s+ieag
BA000038_0 335 ----------HDYVSKIHSSATLLLGIINDILDFSKIEAG 364

BA000038_1229: domain 1 of 1, from 373 to 438: score 92.3, E = 3.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++e+L +els++q
BA000038_1 373 AKSVFLANMSHEIRTPLNGIIGMTEILSQ---------SELSSQQ-- 408

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l i+ ++++ll L+nd+Ldls+ie+g
BA000038_1 409 ----------KEILGDIDTSSQSLLILLNDILDLSKIESG 438

BA000038_0634: domain 1 of 1, from 484 to 549: score 90.7, E = 9.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+a lL + + l++ q
BA000038_0 484 AKSAFLATMSHEIRTPMNGVLGTARLLMD---------SGLNPLQ-- 519

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y ++i r+++ ll+++nd+Ld+s+ieag
BA000038_0 520 ----------KRYADIINRSGKNLLAILNDVLDYSKIEAG 549

BA000038_1220: domain 1 of 1, from 483 to 548: score 79.0, E = 2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla +sHE+RTPL++I+g a+lL++ + ++e
BA000038_1 483 TRADFLAKMSHEIRTPLNGILGIAQLLKR---------SVNDAEN-- 518

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ +++e+ll+ +nd+Ld+s+ie+g
BA000038_1 519 ----------LKQVDVLCNSGEHLLAVLNDILDFSKIEQG 548

BA000038_0933: domain 1 of 1, from 679 to 747: score 77.7, E = 4.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ +++l + +d++l+++q+
BA000038_0 679 YKSEFLANMSHELRTPLNSILILSQLFAN------NKDGNLTAKQI- 718

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + i +++ ll+Lin++Ldls+ eag
BA000038_0 719 -----------ESAKAINSSGSDLLSLINEILDLSKVEAG 747

BA000038_0647: domain 1 of 1, from 690 to 755: score 74.5, E = 3.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fla +sHELRTP++a++g+ e+L ++e
BA000038_0 690 ARNQFLAVVSHELRTPIAAMLGLMEILSH---------RLSNSES-- 725

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++r+aerl+ +nd+Ld+s+iea
BA000038_0 726 ----------QQLLDNAIRSAERLSLHVNDILDFSKIEAS 755

BA000038_1420: domain 1 of 1, from 238 to 303: score 74.4, E = 4.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE RTPL+aI+g++++ + ++ ++se+
BA000038_1 238 TKSKFLANISHEVRTPLNAIIGLSDT--D-------HYLNASEQI-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ i+r++++ll+L nd+Ld+s+i++g
BA000038_1 274 ----------REYIDLIHRSGKHLLALMNDILDISKIDSG 303

BA000038_0329: domain 1 of 1, from 699 to 764: score 71.0, E = 3.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++fla++sHELRTPL+a g+++l + + se +
BA000038_0 699 ARERFLATMSHELRTPLAATYGLLDLVAT---------HSTSERD-- 734

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ ++++++++l+ L++++Ld+s++eag
BA000038_0 735 ----------KELVLRAKQSLNHLNLLVDEVLDYSKLEAG 764

BA000038_1485: domain 1 of 1, from 237 to 303: score 64.9, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef ++++HELRTP+ +++ ++++l+ ++se++
BA000038_1 237 RLSEFSSDIAHELRTPIGNMMTQTQVMLA---------KPRSEQE-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++le+ +e+ rl + i+d+L l++ e++
BA000038_1 273 ---------YRDILESNAEELSRLTKTISDMLYLAKSEHN 303

BA000038_0112: domain 1 of 1, from 288 to 353: score 57.3, E = 2.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++++HEL+TPLt +r++ae +l+ +++q+
BA000038_0 288 REKRFTRTAAHELKTPLTILRLNAENALA----------SENPQQL- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ il+ +er +rLi +lL+l++ e+
BA000038_0 324 ----------SHDLNNILKGIERTDRLIHQLLTLAKVENA 353

BA000038_0248: domain 1 of 1, from 210 to 275: score 53.5, E = 3.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++HELRTP+ ++ a+lL + ++l+e+q
BA000038_0 210 SNKVLTNAVAHELRTPIFRLQWQADLLAD---------SPLNEKQ-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++ ++++ ++++++++L ++++e +
BA000038_0 246 ----------QKSVSSMVEDIDEMEAMVEEMLYYAKMERP 275

BA000038_1246: domain 1 of 1, from 222 to 286: score 47.1, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f ++ HE+RTPL+ I+++++l ++ + ++eq
BA000038_1 222 QSQIFSQAIPHEIRTPLSRIQMASDLVRR----------KVPAEQ-- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i++ +e +++L d+ +lsr+ a
BA000038_1 257 ----------QRLFDDIDEYIEDINELTTDVIQLSRLNAL 286

BA000038_0810: domain 1 of 1, from 267 to 334: score 28.9, E = 3.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l l HELRTP++++++++e ++e+ ++l+e
BA000038_0 267 SRMLVLQILTHELRTPIASLSLTVEGFRREF-------EHLPETV-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ ++++rl++L + d+ + +++
BA000038_0 305 ----------YDEFRRLCEDTRRLRQLAEASKDYLQSDNQ 334


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 20 0|====
-13 34 1|*=====
-12 95 38|======*=========
-11 166 201|============================ *
-10 275 373|============================================== *
-9 299 385|================================================== *
-8 245 288|========================================= *
-7 205 181|==============================*====
-6 131 104|=================*====
-5 87 57|=========*=====
-4 48 30|====*===
-3 23 16|==*=
-2 21 8|=*==
-1 9 4|*=
0 8 2|*=
1 5 1|*
2 2 0|=
3 1 0|=
> 4 23 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 195.0681
P(chi-square) = 1.721e-36

Total sequences searched: 1697

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: