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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Vibrio vulnificus YJ016  

Data for BA000038  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: BA000038.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000038_1188 CDS_1311322-1309607 73.7 8.2e-22 1
BA000038_1062 CDS_1189031-1190530 52.2 1.8e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000038_1188 1/1 365 437 .. 1 70 [] 73.7 8.2e-22
BA000038_1062 1/1 303 368 .. 1 70 [] 52.2 1.8e-15

Alignments of top-scoring domains:
BA000038_1188: domain 1 of 1, from 365 to 437: score 73.7, E = 8.2e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.....eare
ERa IARELHDs++QsLs +k+q++l++r + +k +++++ + +
BA000038_1 365 ERATIARELHDSLAQSLSYLKIQVSLLKRSV--AKLNDepqlaRTNQ 409

aldeirelarealaevRrllgdLRpaal<-*
++e+ + ++ a++++R+ll+++R ++
BA000038_1 410 VIAELDTGLSSAYTQLRELLTTFRLTIK 437

BA000038_1062: domain 1 of 1, from 303 to 368: score 52.2, E = 1.8e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD++gQ+++ai+ q++ ++r+ + + + +d+i
BA000038_1 303 VRRDVARELHDEIGQNITAIRTQASIIKRID--NLE--MNIRCADTI 345

relarealaevRrllgdLRpaal<-*
++l+ ++ + rll+ LRp l
BA000038_1 346 EQLSLNVYDTTKRLLSKLRPKML 368


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 26 0|====
-13 65 0|==========
-12 84 18|==*=========
-11 112 155|================ *
-10 301 360|=========================================== *
-9 366 409|===================================================== *
-8 237 315|================================== *
-7 189 198|=========================== *
-6 123 112|===============*==
-5 82 60|========*===
-4 40 31|====*=
-3 26 16|==*=
-2 16 8|=*=
-1 8 4|*=
0 7 2|*
1 2 1|*
2 4 0|=
3 2 0|=
4 1 0|=
5 1 0|=
6 1 0|=
> 7 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 294.4774
P(chi-square) = 0

Total sequences searched: 1697

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: