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Thermotogae
Classification of phyla is from NCBI page
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39 projects found  

1 accessions found for Thermosynechococcus elongatus BP-1  

Data for BA000039  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BA000039.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BA000039_1281 CDS_1335650-1331589 99.2 5.5e-28 1
BA000039_0875 CDS_893802-890695 97.3 1.9e-27 1
BA000039_1366 CDS_1428552-1425370 97.1 2.2e-27 1
BA000039_0436 CDS_434079-436037 87.3 1.3e-24 1
BA000039_0898 CDS_914011-911822 79.6 2e-22 1
BA000039_2350 CDS_2451202-2449925 73.1 1.4e-20 1
BA000039_1830 CDS_1913891-1911747 69.6 1.3e-19 1
BA000039_1658 CDS_1741466-1739547 68.4 2.9e-19 1
BA000039_0924 CDS_947587-946316 62.5 1.4e-17 1
BA000039_1908 CDS_1996813-1995413 57.2 4.4e-16 1
BA000039_0479 CDS_478081-475949 53.2 5.9e-15 1
BA000039_0029 CDS_25137-26279 42.5 6.4e-12 1
BA000039_0195 CDS_177449-178606 38.8 7.4e-11 1
BA000039_1564 CDS_1631354-1632628 33.0 3.1e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BA000039_1281 1/1 823 888 .. 1 87 [] 99.2 5.5e-28
BA000039_0875 1/1 493 558 .. 1 87 [] 97.3 1.9e-27
BA000039_1366 1/1 602 668 .. 1 87 [] 97.1 2.2e-27
BA000039_0436 1/1 403 471 .. 1 87 [] 87.3 1.3e-24
BA000039_0898 1/1 359 427 .. 1 87 [] 79.6 2e-22
BA000039_2350 1/1 196 261 .. 1 87 [] 73.1 1.4e-20
BA000039_1830 1/1 487 552 .. 1 87 [] 69.6 1.3e-19
BA000039_1658 1/1 411 478 .. 1 87 [] 68.4 2.9e-19
BA000039_0924 1/1 181 245 .. 1 87 [] 62.5 1.4e-17
BA000039_1908 1/1 242 309 .. 1 87 [] 57.2 4.4e-16
BA000039_0479 1/1 247 308 .. 1 84 [. 53.2 5.9e-15
BA000039_0029 1/1 150 223 .. 1 87 [] 42.5 6.4e-12
BA000039_0195 1/1 151 213 .. 1 87 [] 38.8 7.4e-11
BA000039_1564 1/1 200 248 .. 1 69 [. 33.0 3.1e-09

Alignments of top-scoring domains:
BA000039_1281: domain 1 of 1, from 823 to 888: score 99.2, E = 5.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP++a++g++ lLl+ t+l+e+q
BA000039_1 823 AKSEFLATMSHEIRTPMNAVLGFTNLLLD---------TPLNEQQ-- 858

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+t+++++e ll +ind+Ld+s+ie+g
BA000039_1 859 ----------RDFLQTLHQAGEALLTIINDILDFSKIESG 888

BA000039_0875: domain 1 of 1, from 493 to 558: score 97.3, E = 1.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP++aI+g++ lLl+ t+l+++q
BA000039_0 493 AKSEFLATMSHEIRTPMNAIIGLTGLLLD---------TPLNPQQ-- 528

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ti+ +++ ll ind+Ld+s+ie+g
BA000039_0 529 ----------QEFVNTIRLSGDALLGVINDILDFSKIESG 558

BA000039_1366: domain 1 of 1, from 602 to 668: score 97.1, E = 2.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI+g++++Ll d +l +++
BA000039_1 602 AKSIFLANMSHELRTPLNAILGFSQILLS--------DRTLAPQH-- 638

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le+i r++e+ll Lind+Ld+++ieag
BA000039_1 639 ----------RQTLEKINRSGEHLLGLINDVLDMAKIEAG 668

BA000039_0436: domain 1 of 1, from 403 to 471: score 87.3, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak ++++n+sHELRTPL I+ +e+++e++ + lse+++
BA000039_0 403 AKAQLISNVSHELRTPLFNIKSIIETIQEYG-------SSLSEKEQ- 441

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+let+ +e++rl rL+nd+Ld+sr+e+g
BA000039_0 442 ----------QEFLETANHETDRLTRLVNDFLDISRLESG 471

BA000039_0898: domain 1 of 1, from 359 to 427: score 79.6, E = 2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla++sHELRTPLt ++g + +Ll++ ++l+++q
BA000039_0 359 IKNDFLATMSHELRTPLTCVIGVSATLLRW------PLGPLTAKQ-- 397

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyle+i++++ +ll+Lin +Ldls +e g
BA000039_0 398 ----------REYLEIIHESGTHLLELINSILDLSEAELG 427

BA000039_2350: domain 1 of 1, from 196 to 261: score 73.1, E = 1.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a++sHELR+P++ I+++++++l+ t+ + q
BA000039_2 196 YLKQFTADASHELRNPVALIQTNVQVALA---------TADPQTQ-- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +i+r ++rl+rL++dlL l+r ++g
BA000039_2 232 ----------RQQLLVIERLSRRLSRLVDDLLFLARQDSG 261

BA000039_1830: domain 1 of 1, from 487 to 552: score 69.6, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl+++sHELRTP++ +++++++L+ ++++ +
BA000039_1 487 IKDDFLSTVSHELRTPMANMKMAIHMLKQ----------FATDDRQ- 522

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ +e +r +LindlLdl r+eag
BA000039_1 523 ----------KRYLDILANECNRETELINDLLDLQRLEAG 552

BA000039_1658: domain 1 of 1, from 411 to 478: score 68.4, E = 2.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s ++a HELRTPL++I+ +e L ++++++e r
BA000039_1 411 TRSNLIAITGHELRTPLSTIQVCLESLAS--------EPDMDPELR- 448

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+t+l +aer+++Li+d+L+ls++e+g
BA000039_1 449 ----------QVMLSTALADAERMRKLIQDFLTLSQLESG 478

BA000039_0924: domain 1 of 1, from 181 to 245: score 62.5, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HEL+TPLt++r+ +e+L+ ++ ++ +
BA000039_0 181 ERDRWAADVAHELKTPLTSLRLVTETLQQRV-----------PQSL- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++++l+e+ rl+ L+++lL+l r+ +
BA000039_0 216 ----------RDWVDRLLEEIIRLSLLVQELLELNRLSHT 245

BA000039_1908: domain 1 of 1, from 242 to 309: score 57.2, E = 4.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a++sH+LR PLtaI++ ++lL+ +l + ++
BA000039_1 242 QIKQFTADASHQLRHPLTAIQASVSLLEVYL-------NNFDPSC-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i ++ ++++ Lin lL l+ri+++
BA000039_1 280 ----------LNKIKIISSACQQMSTLINKLLILARIDNE 309

BA000039_0479: domain 1 of 1, from 247 to 308: score 53.2, E = 5.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++l +l HEL++PLtaI+g+++lL ++l+e+q
BA000039_0 247 QQKRLLLSLGHELKNPLTAILGLTQLLWQ---------HPLPEQQ-- 282

peLRledpeyreyletilreaerllrLindlLdlsri<-*
+yl i+r++ +++rLi+ d++r+
BA000039_0 283 -----------DYLALIQRSGWQMNRLIQAWQDYTRA 308

BA000039_0029: domain 1 of 1, from 150 to 223: score 42.5, E = 6.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++ ++ l+HELR+PLta ++e+L+ +l +e s++q++
BA000039_0 150 FKDRIISLLAHELRNPLTAGGIALETLESNL-------QEESSQQLP 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++++++ ++++++ + +Li dlL +r +
BA000039_0 190 IE------DIQRLFHHARSQTQTMGQLITDLLLAARGPQD 223

BA000039_0195: domain 1 of 1, from 151 to 213: score 38.8, E = 7.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ + +l H+LR+P++aIr++++lLl+ + e + +
BA000039_0 151 QRQQRFDDLLHQLRNPVAAIRTFVKLLLK--------RLEPDHKG-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e i +e+erl +L++d r + +
BA000039_0 188 ----------RPLAEGIAKETERLMALLEDY----RQQRN 213

BA000039_1564: domain 1 of 1, from 200 to 248: score 33.0, E = 3.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++l +lsHE RTPLt+I ++++lL++ ++l+ +
BA000039_1 200 ADIRLLQALSHEVRTPLTTINTLIQLLQR--------QENLPQRT-- 236

peLRledpeyreyletilreae<-*
+yl++i +e++
BA000039_1 237 ----------YQYLQKIGQEIQ 248


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 1 0|=
-14 12 0|==
-13 57 1|*======
-12 98 56|======*====
-11 226 293|========================== *
-10 378 544|========================================== *
-9 490 562|======================================================= *
-8 439 420|==============================================*==
-7 284 265|=============================*==
-6 219 152|================*========
-5 109 83|=========*===
-4 63 44|====*==
-3 35 23|==*=
-2 20 12|=*=
-1 18 6|*=
0 4 3|*
1 4 1|*
2 1 0|=
3 0 0|
4 1 0|=
5 0 0|
> 6 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 182.3216
P(chi-square) = 3.399e-33

Total sequences searched: 2475

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: