Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Tropheryma whipplei TW08/27  

Data for BX072543  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX072543.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX072543_0050 CDS_46251-44860 66.6 3.1e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX072543_0050 1/1 228 295 .. 1 87 [] 66.6 3.1e-19

Alignments of top-scoring domains:
BX072543_0050: domain 1 of 1, from 228 to 295: score 66.6, E = 3.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fla++sHELRTPL ++rgyael + ++l ++
BX072543_0 228 EMKQFLADASHELRTPLVSLRGYAELYRI---------GALKGKE-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+i++ea r+ +++dlL l+r+e
BX072543_0 264 --------DIDNAIERIEKEAIRMGTMVEDLLSLTRLEKA 295


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 5 0|==
-13 13 0|=====
-12 50 17|=====*===========
-11 79 92|=========================== *
-10 120 172|======================================== *
-9 167 177|======================================================== *
-8 138 133|============================================*=
-7 82 83|===========================*
-6 55 48|===============*===
-5 33 26|========*==
-4 13 14|====*
-3 14 7|==*==
-2 8 3|*==
-1 3 2|*
> 0 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 84.6414
P(chi-square) = 1.924e-14

Total sequences searched: 784

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: