Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Tropheryma whipplei TW08/27  

Data for BX072543  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: BX072543.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX072543_0621 CDS_745456-743942 113.9 6.1e-33 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX072543_0621 1/1 294 379 .. 1 94 [] 113.9 6.1e-33

Alignments of top-scoring domains:
BX072543_0621: domain 1 of 1, from 294 to 379: score 113.9, E = 6.1e-33
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHR+KN+LQ+++S+LrLQ+r++++e v ++ + ++++R+l
BX072543_0 294 EIHHRIKNSLQTVASILRLQSRRSDSEIV-----RAEFADAVRRILG 335

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
++ +H+ L++ + ++++f++++ kL++ ++++++++++gi+L+ +
BX072543_0 336 VSEVHDALSRDLS-ENLNFDDFFPKLVKLIISLAELDKNGIDLR--I 379


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 7 4|=*=
-12 43 51|=============== *
-11 172 143|===============================================*==========
-10 157 185|===================================================== *
-9 147 156|================================================= *
-8 105 105|==================================*
-7 62 62|====================*
-6 38 34|===========*=
-5 27 18|=====*===
-4 12 9|==*=
-3 4 5|=*
-2 2 2|*
-1 1 1|*
> 0 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 16.4981
P(chi-square) = 0.03578

Total sequences searched: 784

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: