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Classification of phyla is from NCBI page
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76 projects found  

1 accessions found for Bordetella pertussis Tohama I  

Data for BX470248  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX470248.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX470248_0158 CDS_159075-157765 88.1 1.2e-24 1
BX470248_1840 CDS_1967716-1964000 87.0 2.4e-24 1
BX470248_2503 CDS_2700340-2701698 71.1 8e-20 1
BX470248_0156 CDS_157035-155638 69.4 2.3e-19 1
BX470248_2435 CDS_2629367-2632081 66.3 1.7e-18 1
BX470248_1566 CDS_1676392-1677468 57.3 6.3e-16 1
BX470248_3474 CDS_3745965-3747083 49.8 8.3e-14 1
BX470248_3801 CDS_4077967-4079430 46.7 6.5e-13 1
BX470248_2164 CDS_2328914-2330263 46.4 7.7e-13 1
BX470248_0564 CDS_576744-579053 40.4 3.9e-11 1
BX470248_0973 CDS_1033703-1031949 40.4 3.9e-11 1
BX470248_0495 CDS_515472-514195 40.3 4.3e-11 1
BX470248_3084 CDS_3345207-3343885 29.2 5.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX470248_0158 1/1 203 272 .. 1 87 [] 88.1 1.2e-24
BX470248_1840 1/1 719 785 .. 1 87 [] 87.0 2.4e-24
BX470248_2503 1/1 226 291 .. 1 87 [] 71.1 8e-20
BX470248_0156 1/1 232 298 .. 1 87 [] 69.4 2.3e-19
BX470248_2435 1/1 684 751 .. 1 87 [] 66.3 1.7e-18
BX470248_1566 1/1 128 184 .. 1 78 [. 57.3 6.3e-16
BX470248_3474 1/1 140 205 .. 1 87 [] 49.8 8.3e-14
BX470248_3801 1/1 249 314 .. 1 87 [] 46.7 6.5e-13
BX470248_2164 1/1 229 294 .. 1 87 [] 46.4 7.7e-13
BX470248_0564 1/1 511 583 .. 1 87 [] 40.4 3.9e-11
BX470248_0973 1/1 351 421 .. 1 87 [] 40.4 3.9e-11
BX470248_0495 1/1 173 238 .. 1 87 [] 40.3 4.3e-11
BX470248_3084 1/1 221 287 .. 1 87 [] 29.2 5.8e-08

Alignments of top-scoring domains:
BX470248_0158: domain 1 of 1, from 203 to 272: score 88.1, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ g++e+L+e + ++l++eqr
BX470248_0 203 TRRDFVANVSHELRTPLTVLAGFLETLRE------LPAEALPAEQR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y ++++a+r++++++dlL+ls +e+
BX470248_0 243 ----------DQYMAMMHEQARRMQAIVEDLLTLSTLESS 272

BX470248_1840: domain 1 of 1, from 719 to 785: score 87.0, E = 2.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+RTP++aI+g++el+l +++ e++
BX470248_1 719 AKTTFLATMSHEIRTPMNAIIGMLELALL--------RPTDQEPD-- 755

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++++++a++ll+Li d+Ld+++ieag
BX470248_1 756 ----------RQSIQVAYDSARSLLELIGDILDIAKIEAG 785

BX470248_2503: domain 1 of 1, from 226 to 291: score 71.1, E = 8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+L+TPL+++r+ ael+l+ ++s+e++
BX470248_2 226 TQRRFVADAAHQLKTPLAGLRTQAELALR----------DASPEEM- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + +er rL+n+lL l+r+e++
BX470248_2 262 ----------QSSLRQLVTGSERATRLVNQLLLLARAENP 291

BX470248_0156: domain 1 of 1, from 232 to 298: score 69.4, E = 2.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f a+++HELRTPL++++ a++ l +++s+e++
BX470248_0 232 KMEGFNADVAHELRTPLATLINGAQVTLS---------SPRSAEEL- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l + l+e+e l L+nd+L l+r++ g
BX470248_0 269 ----------REALTSNLEELEDLKTLVNDMLFLARADRG 298

BX470248_2435: domain 1 of 1, from 684 to 751: score 66.3, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt+++g+ae+L++ + +++++
BX470248_2 684 LRNALLAAVSHDLRTPLTSLLGMAETLQR-------SPAAMTPAA-- 721

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++++a+r+ +L+ +lLd++r+++
BX470248_2 722 ----------LETVAAMQDQARRMHALVVNLLDMARLQSH 751

BX470248_1566: domain 1 of 1, from 128 to 184: score 57.3, E = 6.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e+l+nl+HE ++PL ++rg+a+lL++ el++ +
BX470248_1 128 SHRELLRNLAHEVKNPLGGLRGAAQLLEA----------ELPSAAL- 163

peLRledpeyreyletilreaerllrLindl<-*
+ey+++i+ ea+rl++L+++l
BX470248_1 164 ----------AEYTQVIITEADRLQALVDRL 184

BX470248_3474: domain 1 of 1, from 140 to 205: score 49.8, E = 8.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ +++H+LRTPL+++r+ +el+l+ +l+e+
BX470248_3 140 AQRRFIGHAAHQLRTPLSGLRLESELMLA---------RPLPEDV-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e+i+ ++r+ rL ++lL ++r++
BX470248_3 176 ----------RMRAERIKAVSDRMIRLGQQLLVMARADPD 205

BX470248_3801: domain 1 of 1, from 249 to 314: score 46.7, E = 6.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fl ++sH+LRTPL+++r+ + +l+ ++ + e
BX470248_3 249 VQRQFLDDASHQLRTPLSVLRTQTAYALR---------ETDPQEV-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l +++ ++r r n++L l+r+
BX470248_3 285 ----------RTALLAMQDGLDRAVRTTNQMLALARAKDA 314

BX470248_2164: domain 1 of 1, from 229 to 294: score 46.4, E = 7.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HELRTPL+a+++ ae++l + +e
BX470248_2 229 RERRLIADAAHELRTPLAALKMQAEVALG---------ARHADER-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l ++l++a+r rL ++lLd +r++a
BX470248_2 265 ----------HSALCKLLDAARRAARLSEQLLDQARLDAM 294

BX470248_0564: domain 1 of 1, from 511 to 583: score 40.4, E = 3.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L ++l + + ++++++ +
BX470248_0 511 AWGEVARRLAHEIKNPLTPIQLSAERLAMKL---ADRLQPADAQML- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti +++ +l ++++d+++++r
BX470248_0 554 ----------IRSTNTIVNQVGSLKQMVDDFREYARTPPA 583

BX470248_0973: domain 1 of 1, from 351 to 421: score 40.4, E = 3.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PLtaI y+ + + + + +
BX470248_0 351 TMGEMASSLAHELNQPLTAIANYSMGAVA---------LVKAGHTSP 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L +le++ ++aer ++i++++++ + ++
BX470248_0 389 NML-------LPALEKAASQAERAGKIISRIREFVKRSEP 421

BX470248_0495: domain 1 of 1, from 173 to 238: score 40.3, E = 4.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+fla++sH+LRTPL+ +++ a+ +l+ e+++ +
BX470248_0 173 EQSQFLADASHQLRTPLAIMLTQAQYALR----------ERDPVRA- 208

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ i +++ r + L ++lL l+ + +
BX470248_0 209 ----------QEGLRAIVDQLGRTRCLTEQLLSLAHASQA 238

BX470248_3084: domain 1 of 1, from 221 to 287: score 29.2, E = 5.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef n+sHE RTPL+aIr +e++l + l+e q
BX470248_3 221 REREFSVNVSHEVRTPLAAIRSDSEMMLL--------AAGLDEGQ-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +i ++ + ++ + ++r e
BX470248_3 258 ----------RTRLVRIVANVDNVSTALESARAMARDEPR 287


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 6 0|=
-13 25 2|*==
-12 91 78|=======*=
-11 246 408|======================= *
-10 488 758|============================================= *
-9 635 782|==========================================================*
-8 621 586|=====================================================*===
-7 431 369|=================================*======
-6 274 212|===================*=====
-5 185 116|==========*======
-4 97 62|=====*===
-3 54 32|==*==
-2 25 17|=*=
-1 19 9|*=
0 221 4|*====================
1 5 2|*
2 3 1|*
3 2 0|=
4 1 0|=
> 5 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 307.9357
P(chi-square) = 0

Total sequences searched: 3806

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: