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1 accessions found for Bordetella parapertussis 12822  

Data for BX470249  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX470249.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX470249_3978 CDS_4331482-4332792 88.1 1.4e-24 1
BX470249_3017 CDS_3268701-3272417 87.0 2.8e-24 1
BX470249_2621 CDS_2830859-2829501 71.1 9.3e-20 1
BX470249_3980 CDS_4333522-4334919 69.5 2.5e-19 1
BX470249_3453 CDS_3752195-3754990 66.3 2e-18 1
BX470249_2975 CDS_3213213-3212137 57.3 7.3e-16 1
BX470249_2531 CDS_2732103-2733221 49.8 9.6e-14 1
BX470249_3765 CDS_4100047-4098536 46.8 6.9e-13 1
BX470249_4397 CDS_4765262-4766725 46.7 7.6e-13 1
BX470249_2852 CDS_3064677-3066026 46.4 8.9e-13 1
BX470249_0261 CDS_270062-272371 42.6 1e-11 1
BX470249_2890 CDS_3116767-3113795 40.7 3.7e-11 1
BX470249_1461 CDS_1565740-1563986 40.4 4.5e-11 1
BX470249_3343 CDS_3620158-3621582 37.3 3.5e-10 1
BX470249_0375 CDS_396188-394815 34.8 1.7e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX470249_3978 1/1 203 272 .. 1 87 [] 88.1 1.4e-24
BX470249_3017 1/1 719 785 .. 1 87 [] 87.0 2.8e-24
BX470249_2621 1/1 226 291 .. 1 87 [] 71.1 9.3e-20
BX470249_3980 1/1 232 298 .. 1 87 [] 69.5 2.5e-19
BX470249_3453 1/1 700 767 .. 1 87 [] 66.3 2e-18
BX470249_2975 1/1 128 184 .. 1 78 [. 57.3 7.3e-16
BX470249_2531 1/1 140 205 .. 1 87 [] 49.8 9.6e-14
BX470249_3765 1/1 251 316 .. 1 87 [] 46.8 6.9e-13
BX470249_4397 1/1 249 314 .. 1 87 [] 46.7 7.6e-13
BX470249_2852 1/1 229 294 .. 1 87 [] 46.4 8.9e-13
BX470249_0261 1/1 511 583 .. 1 87 [] 42.6 1e-11
BX470249_2890 1/1 615 683 .. 1 87 [] 40.7 3.7e-11
BX470249_1461 1/1 351 421 .. 1 87 [] 40.4 4.5e-11
BX470249_3343 1/1 248 307 .. 1 87 [] 37.3 3.5e-10
BX470249_0375 1/1 237 303 .. 1 87 [] 34.8 1.7e-09

Alignments of top-scoring domains:
BX470249_3978: domain 1 of 1, from 203 to 272: score 88.1, E = 1.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ g++e+L+e + ++l++eqr
BX470249_3 203 TRRDFVANVSHELRTPLTVLAGFLETLRE------LPAEALPAEQR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y ++++a+r++++++dlL+ls +e+
BX470249_3 243 ----------DQYMAMMHEQARRMQAIVEDLLTLSTLESS 272

BX470249_3017: domain 1 of 1, from 719 to 785: score 87.0, E = 2.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+RTP++aI+g++el+l +++ e++
BX470249_3 719 AKTTFLATMSHEIRTPMNAIIGMLELALL--------RPADQEPD-- 755

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++++++a++ll+Li d+Ld+++ieag
BX470249_3 756 ----------RQSIQVAYDSARSLLELIGDILDIAKIEAG 785

BX470249_2621: domain 1 of 1, from 226 to 291: score 71.1, E = 9.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+L+TPL+++r+ ael+l+ ++s+e++
BX470249_2 226 TQRRFVADAAHQLKTPLAGLRTQAELALR----------DASPEEM- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + +er rL+n+lL l+r+e++
BX470249_2 262 ----------QSSLRQLVTGSERATRLVNQLLLLARAENP 291

BX470249_3980: domain 1 of 1, from 232 to 298: score 69.5, E = 2.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPL++++ a++ l +++s+e++
BX470249_3 232 QMEGFNADVAHELRTPLATLINGAQVTLS---------SPRSAEEL- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l + l+e+e l L+nd+L l+r++ g
BX470249_3 269 ----------REALVSNLEELEDLKTLVNDMLFLARADRG 298

BX470249_3453: domain 1 of 1, from 700 to 767: score 66.3, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt+++g+ae+L++ + +++++
BX470249_3 700 LRNALLAAVSHDLRTPLTSLLGMAETLQR-------SPAAMTPAA-- 737

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++++a+r+ +L+ +lLd++r+++
BX470249_3 738 ----------LETVAAMQDQARRMHALVVNLLDMARLQSH 767

BX470249_2975: domain 1 of 1, from 128 to 184: score 57.3, E = 7.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e+l+nl+HE ++PL ++rg+a+lL++ el++ +
BX470249_2 128 SHRELLRNLAHEVKNPLGGLRGAAQLLEA----------ELPSAAL- 163

peLRledpeyreyletilreaerllrLindl<-*
+ey+++i+ ea+rl++L+++l
BX470249_2 164 ----------AEYTQVIITEADRLQALVDRL 184

BX470249_2531: domain 1 of 1, from 140 to 205: score 49.8, E = 9.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ +++H+LRTPL+++r+ +el+l+ +l+e+
BX470249_2 140 AQRRFIGHAAHQLRTPLSGLRLESELMLA---------RPLPEDV-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e+i+ ++r+ rL ++lL ++r++
BX470249_2 176 ----------RMRAERIKAVSDRMIRLGQQLLVMARADPD 205

BX470249_3765: domain 1 of 1, from 251 to 316: score 46.8, E = 6.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+fla++sH+LRTPL+ +++ a+ +l+ e+++ +
BX470249_3 251 EQSQFLADASHQLRTPLAIMLTQAQYALR----------ERDPVRV- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ i +++ r +rL ++lL l+ + +
BX470249_3 287 ----------QEGLRAIVDQLGRTRRLTEQLLSLAHASQA 316

BX470249_4397: domain 1 of 1, from 249 to 314: score 46.7, E = 7.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fl ++sH+LRTPL+++r+ + +l+ ++ + e
BX470249_4 249 VQRQFLDDASHQLRTPLSVLRTQTAYALR---------ETDPQEV-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l +++ ++r r n++L l+r+
BX470249_4 285 ----------RTALLAMQDGLDRAVRTTNQMLALARAKDA 314

BX470249_2852: domain 1 of 1, from 229 to 294: score 46.4, E = 8.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HELRTPL+a+++ ae++l + +e
BX470249_2 229 RERRLIADAAHELRTPLAALKMQAEVALG---------ARHADER-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l ++l++a+r rL ++lLd +r++a
BX470249_2 265 ----------HSALCKLLDAARRAARLSEQLLDQARLDAM 294

BX470249_0261: domain 1 of 1, from 511 to 583: score 42.6, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L ++l + + ++++++ +
BX470249_0 511 AWGEVARRLAHEIKNPLTPIQLSAERLAMKL---ADRLQPADAQML- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti +++ +l ++++d+++++r+
BX470249_0 554 ----------IRSTNTIVNQVGSLKQMVDDFREYARMPPA 583

BX470249_2890: domain 1 of 1, from 615 to 683: score 40.7, E = 3.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +I+g++ l+ ++l + ++ee
BX470249_2 615 AVGRLTGGIAHDFNNMLQGISGALYLIDRKL------RRSKPEEV-- 653

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++t++++++r rL ++lL++sr +a
BX470249_2 654 ----------GKYVRTAQESTDRAARLTQRLLTFSRQQAI 683

BX470249_1461: domain 1 of 1, from 351 to 421: score 40.4, E = 4.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PLtaI y+ + + + + +
BX470249_1 351 TMGEMASSLAHELNQPLTAIANYSMGAVA---------LVKAGHTSP 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L +le++ ++aer ++i++++++ + ++
BX470249_1 389 NML-------LPALEKAASQAERAGKIISRIREFVKRSEP 421

BX470249_3343: domain 1 of 1, from 248 to 307: score 37.3, E = 3.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPL+ +r+ +e+ + se+
BX470249_3 248 DRELMLAGISHDLRTPLARMRLEIEM------------SGVSEDA-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++++ ++++ i +l++++r
BX470249_3 281 -------------RQAIDEDLGQIDHSIGQLMEYARPAGT 307

BX470249_0375: domain 1 of 1, from 237 to 303: score 34.8, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +++H LRTPLt I+g++ ++++ + s ++
BX470249_0 237 SARHISDTIAHNLRTPLTRIIGALRAAQR---------PGVSMTDV- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + +++++erl+ L++ lL+++ +eag
BX470249_0 274 ----------LEANQHAIESIERLNVLLEKLLQIAELEAG 303


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 7 0|=
-13 26 3|*=
-12 121 95|======*==
-11 293 496|==================== *
-10 634 920|=========================================== *
-9 865 950|==========================================================*
-8 790 711|===============================================*=====
-7 556 448|=============================*========
-6 376 258|=================*========
-5 232 141|=========*======
-4 119 75|====*===
-3 72 40|==*==
-2 32 20|=*=
-1 23 10|*=
0 8 5|*
1 6 2|*
2 2 1|*
3 2 0|=
4 1 0|=
> 5 20 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 402.7471
P(chi-square) = 0

Total sequences searched: 4402

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: