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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

1 accessions found for Bordetella parapertussis 12822  

Data for BX470249  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: BX470249.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX470249_0911 CDS_985362-986459 57.1 1.6e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX470249_0911 1/1 157 233 .. 1 70 [] 57.1 1.6e-16

Alignments of top-scoring domains:
BX470249_0911: domain 1 of 1, from 157 to 233: score 57.1, E = 1.6e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.........
ER+RIA ELHD vg +Lsa+k +++++r++ d+ +++++++++
BX470249_0 157 ERQRIAMELHDAVGGMLSALKFDMSRLARHI--DRTLGgpgqderra 201

earealdeirelarealaevRrllgdLRpaal<-*
+++ + e+ +l+++++a vR++ dL+p+al
BX470249_0 202 QLEGVVGECLGLVQDTIATVRQISEDLHPSAL 233


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 2 0|=
-13 30 0|===
-12 59 46|===*=
-11 102 383|========= *
-10 406 890|================================== *
-9 668 1010|======================================================== *
-8 623 778|==================================================== *
-7 632 489|========================================*============
-6 489 277|=======================*=================
-5 461 148|============*==========================
-4 263 77|======*===============
-3 179 39|===*===========
-2 93 20|=*======
-1 77 10|*======
0 33 5|*==
1 28 2|*==
2 16 1|*=
3 8 0|=
4 4 0|=
5 3 0|=
6 0 0|
7 4 0|=
8 0 0|
9 1 0|=
10 1 0|=
11 0 0|
> 12 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 3239.3174
P(chi-square) = 0

Total sequences searched: 4402

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: