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Classification of phyla is from NCBI page
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1 accessions found for Bordetella bronchiseptica RB50  

Data for BX470250  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX470250.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX470250_4462 CDS_4766494-4767804 88.1 1.5e-24 1
BX470250_2985 CDS_3196899-3200615 87.0 3.2e-24 1
BX470250_2068 CDS_2220331-2218973 71.1 1.1e-19 1
BX470250_4464 CDS_4768534-4769931 70.9 1.2e-19 1
BX470250_3912 CDS_4166149-4168944 66.3 2.3e-18 1
BX470250_4535 CDS_4840807-4842222 64.3 8.5e-18 1
BX470250_2943 CDS_3140982-3139915 57.3 8.3e-16 1
BX470250_1979 CDS_2121413-2122531 49.8 1.1e-13 1
BX470250_5001 CDS_5330938-5332353 46.7 8.6e-13 1
BX470250_3173 CDS_3397762-3399111 46.4 1e-12 1
BX470250_4222 CDS_4505567-4504056 46.3 1.1e-12 1
BX470250_2859 CDS_3045488-3042516 40.5 4.9e-11 1
BX470250_0260 CDS_265639-267948 40.4 5.1e-11 1
BX470250_2527 CDS_2694469-2692715 40.4 5.1e-11 1
BX470250_3804 CDS_4036620-4038044 37.3 3.9e-10 1
BX470250_1097 CDS_1186083-1187156 37.0 4.8e-10 1
BX470250_0374 CDS_391586-390213 32.6 8.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX470250_4462 1/1 203 272 .. 1 87 [] 88.1 1.5e-24
BX470250_2985 1/1 719 785 .. 1 87 [] 87.0 3.2e-24
BX470250_2068 1/1 226 291 .. 1 87 [] 71.1 1.1e-19
BX470250_4464 1/1 232 298 .. 1 87 [] 70.9 1.2e-19
BX470250_3912 1/1 700 767 .. 1 87 [] 66.3 2.3e-18
BX470250_4535 1/1 246 312 .. 1 87 [] 64.3 8.5e-18
BX470250_2943 1/1 125 181 .. 1 78 [. 57.3 8.3e-16
BX470250_1979 1/1 140 205 .. 1 87 [] 49.8 1.1e-13
BX470250_5001 1/1 233 298 .. 1 87 [] 46.7 8.6e-13
BX470250_3173 1/1 229 294 .. 1 87 [] 46.4 1e-12
BX470250_4222 1/1 251 316 .. 1 87 [] 46.3 1.1e-12
BX470250_2859 1/1 615 683 .. 1 87 [] 40.5 4.9e-11
BX470250_0260 1/1 511 583 .. 1 87 [] 40.4 5.1e-11
BX470250_2527 1/1 351 421 .. 1 87 [] 40.4 5.1e-11
BX470250_3804 1/1 248 307 .. 1 87 [] 37.3 3.9e-10
BX470250_1097 1/1 130 200 .. 1 87 [] 37.0 4.8e-10
BX470250_0374 1/1 237 303 .. 1 87 [] 32.6 8.4e-09

Alignments of top-scoring domains:
BX470250_4462: domain 1 of 1, from 203 to 272: score 88.1, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ g++e+L+e + ++l++eqr
BX470250_4 203 TRRDFVANVSHELRTPLTVLAGFLETLRE------LPAEALPAEQR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y ++++a+r++++++dlL+ls +e+
BX470250_4 243 ----------DQYMAMMHEQARRMQAIVEDLLTLSTLESS 272

BX470250_2985: domain 1 of 1, from 719 to 785: score 87.0, E = 3.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+RTP++aI+g++el+l +++ e++
BX470250_2 719 AKTTFLATMSHEIRTPMNAIIGMLELALL--------RPADQEPD-- 755

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++++++a++ll+Li d+Ld+++ieag
BX470250_2 756 ----------RQSIQVAYDSARSLLELIGDILDIAKIEAG 785

BX470250_2068: domain 1 of 1, from 226 to 291: score 71.1, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+L+TPL+++r+ ael+l+ ++s+e++
BX470250_2 226 TQRRFVADAAHQLKTPLAGLRTQAELALR----------DASPEEM- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + +er rL+n+lL l+r+e++
BX470250_2 262 ----------QSSLRQLVTGSERATRLVNQLLLLARAENP 291

BX470250_4464: domain 1 of 1, from 232 to 298: score 70.9, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPL++++ a++ l +++s+e++
BX470250_4 232 QMEGFNADVAHELRTPLATLINGAQVTLS---------SPRSAEEL- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l + l+e+e l L+nd+L l+r++ g
BX470250_4 269 ----------REALASNLEELEDLKTLVNDMLFLARADRG 298

BX470250_3912: domain 1 of 1, from 700 to 767: score 66.3, E = 2.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt+++g+ae+L++ + +++++
BX470250_3 700 LRNALLAAVSHDLRTPLTSLLGMAETLQR-------SPAAMTPAA-- 737

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++++a+r+ +L+ +lLd++r+++
BX470250_3 738 ----------LETVAAMQDQARRMHALVVNLLDMARLQSH 767

BX470250_4535: domain 1 of 1, from 246 to 312: score 64.3, E = 8.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f a+l+HE+RTP+++++g ++++l+ +++++++
BX470250_4 246 HLSQFSADLAHEIRTPINVLMGQTQVALR---------QPRGADE-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +le+ l+e+ rl ++++++L lsr+ +
BX470250_4 282 ---------YELLLESNLEELARLAHIVENILFLSRANHD 312

BX470250_2943: domain 1 of 1, from 125 to 181: score 57.3, E = 8.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e+l+nl+HE ++PL ++rg+a+lL++ el++ +
BX470250_2 125 SHRELLRNLAHEVKNPLGGLRGAAQLLEA----------ELPSAAL- 160

peLRledpeyreyletilreaerllrLindl<-*
+ey+++i+ ea+rl++L+++l
BX470250_2 161 ----------AEYTQVIITEADRLQALVDRL 181

BX470250_1979: domain 1 of 1, from 140 to 205: score 49.8, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ +++H+LRTPL+++r+ +el+l+ +l+e+
BX470250_1 140 AQRRFIGHAAHQLRTPLSGLRLESELMLA---------RPLPEDV-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e+i+ ++r+ rL ++lL ++r++
BX470250_1 176 ----------RMRAERIKAVSDRMIRLGQQLLVMARADPD 205

BX470250_5001: domain 1 of 1, from 233 to 298: score 46.7, E = 8.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fl ++sH+LRTPL+++r+ + +l+ ++ + e
BX470250_5 233 VQRQFLDDASHQLRTPLSVLRTQTAYALR---------ETDPQEV-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l +++ ++r r n++L l+r+
BX470250_5 269 ----------RTALLAMQDGLDRAVRTTNQMLALARAKDA 298

BX470250_3173: domain 1 of 1, from 229 to 294: score 46.4, E = 1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HELRTPL+a+++ ae++l + +e
BX470250_3 229 RERRLIADAAHELRTPLAALKMQAEVALG---------ARHADER-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l ++l++a+r rL ++lLd +r++a
BX470250_3 265 ----------HSALCKLLDAARRAARLSEQLLDQARLDAM 294

BX470250_4222: domain 1 of 1, from 251 to 316: score 46.3, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+fla++sH+LRTPL+ +++ a+ +l+ e+++ +
BX470250_4 251 EQSQFLADASHQLRTPLAIMLTQAQYALR----------ERDPVRA- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ i +++ r +rL ++lL l+ + +
BX470250_4 287 ----------QEGLRAIVDQLGRTRRLTEQLLSLAHASQA 316

BX470250_2859: domain 1 of 1, from 615 to 683: score 40.5, E = 4.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +I+g++ l+ ++l + ++ee
BX470250_2 615 AVGRLTGGIAHDFNNMLQGISGALYLIDRKL------RRGKPEEV-- 653

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++t++++++r rL ++lL++sr +a
BX470250_2 654 ----------GKYVRTAQESTDRAARLTQRLLTFSRQQAI 683

BX470250_0260: domain 1 of 1, from 511 to 583: score 40.4, E = 5.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L ++l + + ++++++ +
BX470250_0 511 AWGEVARRLAHEIKNPLTPIQLSAERLAMKL---ADRLQPADAQML- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti +++ +l ++++d+++++r
BX470250_0 554 ----------IRSTNTIVNQVGSLKQMVDDFREYARTPPA 583

BX470250_2527: domain 1 of 1, from 351 to 421: score 40.4, E = 5.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PLtaI y+ + + + + +
BX470250_2 351 TMGEMASSLAHELNQPLTAIANYSMGAVA---------LVKAGHTSP 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L +le++ ++aer ++i++++++ + ++
BX470250_2 389 NML-------LPALEKAASQAERAGKIISRIREFVKRSEP 421

BX470250_3804: domain 1 of 1, from 248 to 307: score 37.3, E = 3.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPL+ +r+ +e+ + se+
BX470250_3 248 DRELMLAGISHDLRTPLARMRLEIEM------------SGVSEDA-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++++ ++++ i +l++++r
BX470250_3 281 -------------RQAIDEDLGQIDHSIGQLMEYARPAGT 307

BX470250_1097: domain 1 of 1, from 130 to 200: score 37.0, E = 4.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ +++HE ++PL+aI + + +++l a+d++ ++
BX470250_1 130 GLESLTTSIAHEVNQPLAAIVASGNAGQRWL----AQDPPNLDKA-- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e+il +a r +++i +++ l+r e +
BX470250_1 171 ----------RQAFERILGDAGRASNIIARVRSLTRGEPP 200

BX470250_0374: domain 1 of 1, from 237 to 303: score 32.6, E = 8.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +++H LRTPLt I g++ ++++ + s ++
BX470250_0 237 SARHISDTIAHNLRTPLTRIVGALRTARR---------PGVSMAEV- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +++++erl+ L++ lL+++ +eag
BX470250_0 274 ----------LDANQHAIESIERLNVLLEKLLQIAELEAG 303


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 6 0|=
-13 37 3|*==
-12 150 114|======*==
-11 367 591|====================== *
-10 786 1098|=============================================== *
-9 996 1134|==========================================================*
-8 932 849|=================================================*=====
-7 672 535|===============================*========
-6 441 307|==================*=======
-5 266 168|=========*======
-4 140 90|=====*===
-3 84 47|==*==
-2 43 25|=*=
-1 23 13|*=
0 12 6|*
1 10 3|*
2 3 1|*
3 2 0|=
4 1 0|=
> 5 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 437.6205
P(chi-square) = 0

Total sequences searched: 5006

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: