Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

1 accessions found for Bordetella bronchiseptica RB50  

Data for BX470250  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: BX470250.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX470250_1118 CDS_1205622-1206719 57.1 1.9e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX470250_1118 1/1 157 233 .. 1 70 [] 57.1 1.9e-16

Alignments of top-scoring domains:
BX470250_1118: domain 1 of 1, from 157 to 233: score 57.1, E = 1.9e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.........
ER+RIA ELHD vg +Lsa+k +++++r++ d+ +++++++++
BX470250_1 157 ERQRIAMELHDAVGGMLSALKFDMSRLARHI--DRTLGgpgqderra 201

earealdeirelarealaevRrllgdLRpaal<-*
+++ + e+ +l+++++a vR++ dL+p+al
BX470250_1 202 QLEGVVGECLGLVQDTIATVRQISEDLHPSAL 233


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 2 0|=
-13 39 0|===
-12 73 55|===*==
-11 130 457|========== *
-10 472 1062|================================== *
-9 791 1206|========================================================= *
-8 766 929|======================================================= *
-7 744 584|=========================================*============
-6 584 330|=======================*==================
-5 554 177|============*===========================
-4 329 92|======*=================
-3 206 47|===*===========
-2 104 24|=*======
-1 84 12|*=====
0 37 6|*==
1 32 3|*==
2 16 1|*=
3 12 0|=
4 6 0|=
5 3 0|=
6 1 0|=
7 4 0|=
8 1 0|=
9 0 0|
10 1 0|=
11 0 0|
> 12 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 3731.0879
P(chi-square) = 0

Total sequences searched: 5006

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: