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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Photorhabdus luminescens subsp. laumondii TTO1  

Data for BX470251  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX470251.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX470251_0908 CDS_1045520-1043193 91.2 2e-25 1
BX470251_3047 CDS_3552326-3549510 85.9 6.2e-24 1
BX470251_3906 CDS_4584900-4583560 84.5 1.6e-23 1
BX470251_4004 CDS_4695407-4693062 76.3 3.3e-21 1
BX470251_3311 CDS_3930542-3929046 71.1 9.8e-20 1
BX470251_4791 CDS_5567968-5569338 69.2 3.4e-19 1
BX470251_1415 CDS_1703862-1701169 66.8 1.7e-18 1
BX470251_0236 CDS_249995-248946 64.2 8.7e-18 1
BX470251_2775 CDS_3295519-3296907 62.3 3.2e-17 1
BX470251_2282 CDS_2682761-2679150 58.6 3.6e-16 1
BX470251_3176 CDS_3740233-3738812 54.6 4.8e-15 1
BX470251_0213 CDS_219654-220985 52.3 2.1e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX470251_0908 1/1 291 356 .. 1 87 [] 91.2 2e-25
BX470251_3047 1/1 469 534 .. 1 87 [] 85.9 6.2e-24
BX470251_3906 1/1 203 270 .. 1 87 [] 84.5 1.6e-23
BX470251_4004 1/1 282 347 .. 1 87 [] 76.3 3.3e-21
BX470251_3311 1/1 272 340 .. 1 87 [] 71.1 9.8e-20
BX470251_4791 1/1 238 300 .. 1 87 [] 69.2 3.4e-19
BX470251_1415 1/1 668 735 .. 1 87 [] 66.8 1.7e-18
BX470251_0236 1/1 129 194 .. 1 87 [] 64.2 8.7e-18
BX470251_2775 1/1 234 298 .. 1 87 [] 62.3 3.2e-17
BX470251_2282 1/1 719 782 .. 1 87 [] 58.6 3.6e-16
BX470251_3176 1/1 247 312 .. 1 87 [] 54.6 4.8e-15
BX470251_0213 1/1 233 293 .. 1 87 [] 52.3 2.1e-14

Alignments of top-scoring domains:
BX470251_0908: domain 1 of 1, from 291 to 356: score 91.2, E = 2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan+sHELRTPL++++g++ l+ t+l+ +q
BX470251_0 291 IKTEFLANMSHELRTPLNGVIGFTRQTLK---------TPLTIQQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl +i+r+a++ll++ind+Ld+sr+ea
BX470251_0 327 ----------TEYLYIIERSANHLLNIINDILDFSRLEAD 356

BX470251_3047: domain 1 of 1, from 469 to 534: score 85.9, E = 6.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g++elL++ + l++e
BX470251_3 469 SKSMFLATVSHELRTPLYGIIGNLELLQA---------HSLPAES-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t+ +++ ll++i+d+Ld+s+ie+
BX470251_3 505 ----------VRLLSTMNNSSALLLKIISDILDFSKIESK 534

BX470251_3906: domain 1 of 1, from 203 to 270: score 84.5, E = 1.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHE+RTPLt+++gy+e++++++ +e s+
BX470251_3 203 ARRDFFANVSHEMRTPLTVLQGYLEVMQDQA-------AEDSSLN-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t++++++rl+ L+ +lL+ls+ie
BX470251_3 241 ----------KKALNTMQEQTRRLDGLVKQLLQLSKIEVA 270

BX470251_4004: domain 1 of 1, from 282 to 347: score 76.3, E = 3.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
BX470251_4 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELTSEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ti+ +a l ++ nd+ ++ +ie
BX470251_4 318 ----------NNYLKTIHVSAITLGNIFNDIIEMDKIERR 347

BX470251_3311: domain 1 of 1, from 272 to 340: score 71.1, E = 9.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+++q
BX470251_3 272 QRHEFLRHISHELKTPLASMREGTELLADEVA------GPLTADQ-- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++l++Li++lLd+ r a
BX470251_3 311 ----------QEVVAILDNSSKHLQQLIEQLLDYNRKLAD 340

BX470251_4791: domain 1 of 1, from 238 to 300: score 69.2, E = 3.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ lL++ + ++
BX470251_4 238 AQQRLISDISHELRTPLTRLQLATALLRR---------RHGENKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL lsr ++
BX470251_4 274 -------------LERIETEAQRLDSMINDLLVLSRSQHK 300

BX470251_1415: domain 1 of 1, from 668 to 735: score 66.8, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l ++ ++++
BX470251_1 668 LRNSLLAALSHDLRTPLTVLFGQAEILMLDL-------SAEGSPH-- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++++ + +rL+n+lLd++ri++g
BX470251_1 706 ----------TKQVNQIRQQILSTSRLVNNLLDMARIQSG 735

BX470251_0236: domain 1 of 1, from 129 to 194: score 64.2, E = 8.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++++l+HE+++PL ++rg+a+lL + +l+++ +
BX470251_0 129 AARELVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+++i+++a+rl++L+++lL ++
BX470251_0 165 ----------QEYTQVIIEQADRLRHLVDRLLGPQHPGER 194

BX470251_2775: domain 1 of 1, from 234 to 298: score 62.3, E = 3.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a++sHELRTPL+ +rg +e+L++++ ++ ++e+
BX470251_2 234 MRRDYMADISHELRTPLSILRGELEALQDGV-------HKPTPET-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++l e+ l +L++dl +ls + g
BX470251_2 272 -------------LNSLLAEITTLTKLVDDLHQLSLSDRG 298

BX470251_2282: domain 1 of 1, from 719 to 782: score 58.6, E = 3.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sHE+RTPL aI+g ++l + +++++
BX470251_2 719 EKSDFLAHMSHEIRTPLQAIIGILDLEVK--------KQTQPSTP-- 755

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++a +l+ +i d+Ld+s+ie+g
BX470251_2 756 -------------LHIAWQAAISLQGIIGDVLDFSKIESG 782

BX470251_3176: domain 1 of 1, from 247 to 312: score 54.6, E = 4.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+LRTPLt++++ + ++l+ +++ q
BX470251_3 247 RQERFSADASHQLRTPLTVLKTQVAVALA----------SKDPAQ-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e l+ i++ ++ +L ++lL+lsr+ a
BX470251_3 282 ---------WKESLQAIDSTLDNTISLTDRLLQLSRLKAH 312

BX470251_0213: domain 1 of 1, from 233 to 293: score 52.3, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ + e+
BX470251_0 233 DRTILIAGVSHDLRTPLTRIRLATEMMSK--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
BX470251_0 264 ----------TYLSESINKDIEECNAIIEQFIDYLRTGQE 293


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 1 0|=
-14 19 0|==
-13 61 3|*====
-12 272 107|=======*===========
-11 509 555|================================== *
-10 803 1029|====================================================== *
-9 842 1063|========================================================= *
-8 788 796|=====================================================*
-7 562 501|=================================*====
-6 350 288|===================*====
-5 181 158|==========*==
-4 128 84|=====*===
-3 71 44|==*==
-2 40 23|=*=
-1 17 12|*=
0 10 6|*
1 6 3|*
2 5 1|*
3 2 0|=
> 4 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 430.4745
P(chi-square) = 0

Total sequences searched: 4905

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: