Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

1 accessions found for Synechococcus sp. WH 8102  

Data for BX548020  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX548020.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX548020_0551 CDS_542442-540400 87.8 9.3e-25 1
BX548020_0948 CDS_909167-910264 68.0 3.9e-19 1
BX548020_0246 CDS_248236-247097 42.5 6.5e-12 1
BX548020_0753 CDS_735964-734813 27.8 9.5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX548020_0551 1/1 413 481 .. 1 87 [] 87.8 9.3e-25
BX548020_0948 1/1 139 203 .. 1 87 [] 68.0 3.9e-19
BX548020_0246 1/1 138 193 .. 1 76 [. 42.5 6.5e-12
BX548020_0753 1/1 145 201 .. 1 80 [. 27.8 9.5e-08

Alignments of top-scoring domains:
BX548020_0551: domain 1 of 1, from 413 to 481: score 87.8, E = 9.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+f++n+sHELRTPL I+ y+e+L + + + ls+e++
BX548020_0 413 AQSRFISNVSHELRTPLFNIKSYVETLHDLG-------DQLSPEEH- 451

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++ +e++rl rL+nd+Ldlsr+e+g
BX548020_0 452 ----------KEFLGVANDETDRLTRLVNDVLDLSRLESG 481

BX548020_0948: domain 1 of 1, from 139 to 203: score 68.0, E = 3.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++++HEL+TPLta+++ ++ L++ + + +
BX548020_0 139 QQERWVSDVAHELKTPLTALMLVSDRLEM----------AVDGTD-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++re++rl+ +++dlL+lsr+e+
BX548020_0 174 ----------TVLVQRLQRELRRLQLMVEDLLELSRLENS 203

BX548020_0246: domain 1 of 1, from 138 to 193: score 42.5, E = 6.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++ H+LR+PL+a+r+ya+lLl+ + e s+e+
BX548020_0 138 QQQSQLRTMVHQLRNPLSALRTYAQLLLR--------RLESSSEH-- 174

peLRledpeyreyletilreaerllrLin<-*
r ++e +l e ++l+r +n
BX548020_0 175 ----------RPLVEGMLAEQNQLNRYVN 193

BX548020_0753: domain 1 of 1, from 145 to 201: score 27.8, E = 9.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l++++HELRTPLta ++++ + l+ ++
BX548020_0 145 AQERLLRMVAHELRTPLTAAALALQS------------QRLGQIDM- 178

peLRledpeyreyletilreaerllrLindlLd<-*
++ ++i r +e +++L dlL+
BX548020_0 179 ----------TRFQDVITRRLEEMEALSKDLLE 201


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 10 0|==
-13 35 1|*====
-12 129 57|=======*=========
-11 258 298|================================= *
-10 410 553|==================================================== *
-9 438 571|======================================================= *
-8 437 427|=====================================================*=
-7 305 269|=================================*=====
-6 229 155|===================*=========
-5 100 85|==========*==
-4 75 45|=====*====
-3 37 24|==*==
-2 23 12|=*=
-1 8 6|*
0 13 3|*=
> 1 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 239.9384
P(chi-square) = 7.957e-315

Total sequences searched: 2526

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: