Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

1 accessions found for Prochlorococcus marinus subsp. pastoris str. CCMP1986  

Data for BX548174  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX548174.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX548174_1341 CDS_1291914-1293983 83.0 1.5e-23 1
BX548174_0706 CDS_670125-671273 62.4 1e-17 1
BX548174_1077 CDS_1021315-1020197 26.8 1.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX548174_1341 1/1 416 484 .. 1 87 [] 83.0 1.5e-23
BX548174_0706 1/1 160 224 .. 1 87 [] 62.4 1e-17
BX548174_1077 1/1 140 196 .. 1 80 [. 26.8 1.2e-07

Alignments of top-scoring domains:
BX548174_1341: domain 1 of 1, from 416 to 484: score 83.0, E = 1.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++n+sHELRTPL I+ y+e+L + ++d+ +eeq
BX548174_1 416 AQNRFISNVSHELRTPLFNIKSYVETLYD------LKDQLSNEEQ-- 454

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ +e++rl rL+nd+Ldlsr+e+g
BX548174_1 455 ----------LEFLGIANSETDRLTRLVNDVLDLSRLESG 484

BX548174_0706: domain 1 of 1, from 160 to 224: score 62.4, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ ++sHEL+TPLt++++ e L+ + s ++
BX548174_0 160 RQTQLINDVSHELKTPLTSLILIGERLES----------TVSKKD-- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++e++rl +++++ L+ls++ +
BX548174_0 195 ----------KYLIKRLKKESKRLKKMVEETLELSKLNNS 224

BX548174_1077: domain 1 of 1, from 140 to 196: score 26.8, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l++++HELRTPLta ++++ ++l+ ++
BX548174_1 140 SQERLLRMVAHELRTPLTAATLAIQS------------QKLGQIDI- 173

peLRledpeyreyletilreaerllrLindlLd<-*
+++ ++i+r +e ++ L +dlL+
BX548174_1 174 ----------KKLQDVIKRRLEEIELLSQDLLE 196


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 11 0|==
-13 53 1|*========
-12 104 39|======*===========
-11 229 202|=================================*=====
-10 334 376|======================================================== *
-9 294 388|================================================= *
-8 253 291|=========================================== *
-7 177 183|==============================*
-6 107 105|=================*
-5 65 57|=========*=
-4 30 30|====*
-3 17 16|==*
-2 17 8|=*=
-1 4 4|*
0 3 2|*
1 5 1|*
2 1 0|=
3 1 0|=
> 4 7 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 153.1827
P(chi-square) = 8.247e-28

Total sequences searched: 1716

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: