Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

1 accessions found for Prochlorococcus marinus str. MIT 9313  

Data for BX548175  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX548175.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX548175_1417 CDS_1504266-1506323 86.3 2.2e-24 1
BX548175_0265 CDS_305007-306506 78.3 4.2e-22 1
BX548175_1860 CDS_1967500-1968672 35.9 4.3e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX548175_1417 1/1 415 483 .. 1 87 [] 86.3 2.2e-24
BX548175_0265 1/1 274 341 .. 1 87 [] 78.3 4.2e-22
BX548175_1860 1/1 143 209 .. 1 87 [] 35.9 4.3e-10

Alignments of top-scoring domains:
BX548175_1417: domain 1 of 1, from 415 to 483: score 86.3, E = 2.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+f++n+sHELRTPL I+ y+e+L + + + lsee++
BX548175_1 415 AQSRFISNVSHELRTPLFNIKSYVETLHDLG-------DQLSEEEK- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++ +e++rl rL+nd+Ldlsr+e+g
BX548175_1 454 ----------KEFLGIANSETDRLARLVNDVLDLSRLESG 483

BX548175_0265: domain 1 of 1, from 274 to 341: score 78.3, E = 4.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +lsHELRTP+t I+gy++ l+++ ++lse+q
BX548175_0 274 RQRKFANALSHELRTPITLIIGYTSRVLRRS-------GNLSEDQ-- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +i++e++rl rLi dlLd++r e+g
BX548175_0 312 ----------RHQLTIIDDETRRLGRLITDLLDIAREESG 341

BX548175_1860: domain 1 of 1, from 143 to 209: score 35.9, E = 4.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e ++ + H+LR+PL+a+r+ya+lL + + e ++ +
BX548175_1 143 EQREQISLMVHQLRNPLAALRTYAQLLMK--------RLEPDSRH-- 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ +l+e +l+r i+ l ++ + +
BX548175_1 180 ----------RTLIKGLLSEQAQLDRYISSLDQIGQDNLP 209


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 10 0|==
-13 33 1|*====
-12 119 51|=======*=========
-11 250 268|==================================== *
-10 390 498|======================================================== *
-9 409 514|==========================================================*
-8 353 385|=================================================== *
-7 282 242|==================================*======
-6 177 139|===================*======
-5 88 76|==========*==
-4 68 41|=====*====
-3 35 21|==*==
-2 23 11|=*==
-1 8 5|*=
0 6 3|*
1 2 1|*
2 1 0|=
3 2 0|=
4 0 0|
5 1 0|=
6 0 0|
> 7 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 192.9484
P(chi-square) = 2.154e-35

Total sequences searched: 2273

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: