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Classification of phyla is from NCBI page
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32 projects found  

1 accessions found for Wolinella succinogenes DSM 1740  

Data for BX571656  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX571656.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX571656_0197 CDS_210092-211708 100.2 2.3e-28 1
BX571656_0905 CDS_939711-936652 92.3 4.2e-26 1
BX571656_0788 CDS_812059-807392 92.2 4.3e-26 1
BX571656_1579 CDS_1629436-1625645 92.1 4.6e-26 1
BX571656_0882 CDS_909535-910902 60.7 3.8e-17 1
BX571656_0598 CDS_625137-623887 51.0 2e-14 1
BX571656_1269 CDS_1317583-1319112 44.3 1.6e-12 1
BX571656_0074 CDS_77722-78954 38.3 8.1e-11 1
BX571656_1456 CDS_1508775-1507768 38.3 8.2e-11 1
BX571656_0283 CDS_303248-301884 37.4 1.5e-10 1
BX571656_0013 CDS_12635-13810 34.5 1e-09 1
BX571656_1349 CDS_1405190-1406353 32.9 2.7e-09 1
BX571656_0787 CDS_807395-806256 32.1 4.8e-09 1
BX571656_1641 CDS_1694712-1695503 30.7 1.2e-08 1
BX571656_1952 CDS_2013802-2012156 30.4 1.4e-08 1
BX571656_0017 CDS_17547-16210 28.2 5.9e-08 1
BX571656_1116 CDS_1154790-1156583 27.8 7.5e-08 1
BX571656_0904 CDS_936655-935450 27.3 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX571656_0197 1/1 272 337 .. 1 87 [] 100.2 2.3e-28
BX571656_0905 1/1 558 624 .. 1 87 [] 92.3 4.2e-26
BX571656_0788 1/1 852 917 .. 1 87 [] 92.2 4.3e-26
BX571656_1579 1/1 798 863 .. 1 87 [] 92.1 4.6e-26
BX571656_0882 1/1 246 313 .. 1 87 [] 60.7 3.8e-17
BX571656_0598 1/1 192 258 .. 1 87 [] 51.0 2e-14
BX571656_1269 1/1 278 349 .. 1 87 [] 44.3 1.6e-12
BX571656_0074 1/1 196 252 .. 1 78 [. 38.3 8.1e-11
BX571656_1456 1/1 125 189 .. 1 87 [] 38.3 8.2e-11
BX571656_0283 1/1 213 279 .. 1 87 [] 37.4 1.5e-10
BX571656_0013 1/1 172 234 .. 1 87 [] 34.5 1e-09
BX571656_1349 1/1 175 228 .. 1 78 [. 32.9 2.7e-09
BX571656_0787 1/1 155 225 .. 1 87 [] 32.1 4.8e-09
BX571656_1641 1/1 158 220 .. 1 87 [] 30.7 1.2e-08
BX571656_1952 1/1 326 396 .. 1 87 [] 30.4 1.4e-08
BX571656_0017 1/1 211 281 .. 1 87 [] 28.2 5.9e-08
BX571656_1116 1/1 385 447 .. 1 87 [] 27.8 7.5e-08
BX571656_0904 1/1 169 241 .. 1 87 [] 27.3 1.1e-07

Alignments of top-scoring domains:
BX571656_0197: domain 1 of 1, from 272 to 337: score 100.2, E = 2.3e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ flan+sHE+RTPL++I+g+ lLle ++l+ eq
BX571656_0 272 VKGVFLANMSHEMRTPLNGIIGFGRLLLE---------ENLNQEQ-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+e+i++++e+ll +ind+Ldls+ie+g
BX571656_0 308 ----------REYVEIIDKSGEHLLGIINDILDLSKIESG 337

BX571656_0905: domain 1 of 1, from 558 to 624: score 92.3, E = 4.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL++I+g+aelL+ +l +r
BX571656_0 558 AKSEFLANMSHEIRTPLNSILGFAELLKP----------ALEKNER- 593

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ yle+i +++ ll +i+d+Ldls+ie+g
BX571656_0 594 ---------FAGYLESIATSGQNLLLIIDDILDLSKIESG 624

BX571656_0788: domain 1 of 1, from 852 to 917: score 92.2, E = 4.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sHE+RTP++aI+g++ l++ t+l++ q
BX571656_0 852 EKSNFLANMSHEIRTPMNAIIGMTYLAQQ---------TDLTPLQ-- 887

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl++i+ +a+ ll Lind+Ld+s+ieag
BX571656_0 888 ----------RDYLQKIEGSANALLGLINDILDFSKIEAG 917

BX571656_1579: domain 1 of 1, from 798 to 863: score 92.1, E = 4.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+n+sHE+RTPL++I+g+ae+L+ + l+ ++
BX571656_1 798 AKSEFLSNMSHEIRTPLNSILGFAEILQH---------SSLGIKE-- 833

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y e il++++ l ++ind+Ldlsr eag
BX571656_1 834 ----------QRYAENILKSGKVLMDIINDILDLSRVEAG 863

BX571656_0882: domain 1 of 1, from 246 to 313: score 60.7, E = 3.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++sHE+++P++ I+gy+e+Ll ++ l+ee+r
BX571656_0 246 QNADIISAISHEFKNPIAIIIGYCETLLG--------EESLPEEKR- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++le+i + a+ l+ Li++l+ +e+
BX571656_0 284 ----------RRFLERISHNAQKLSTLIDRLRLTFSLEND 313

BX571656_0598: domain 1 of 1, from 192 to 258: score 51.0, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef +++sHE++TPL+++r +e++ ++ +++q+
BX571656_0 192 RLSEFSSDVSHEIKTPLSSLRIELEMAAH---------SKNPSPQK- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+ l+ ++ ++++i++lL ls+ +
BX571656_0 229 ----------EAFWERNLKRIDLIQKIIENLLLLSQTDRS 258

BX571656_1269: domain 1 of 1, from 278 to 349: score 44.3, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla+ sHEL+TPL+aI+ +a + ++ e +e+++l
BX571656_1 278 TKDDFLAMFSHELKTPLNAIINFAPYVHSKI-----SEVEIPEKEKL 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +i+r ++ +l++++ +Ld +r++ag
BX571656_1 320 ----------SKLLLSIERNGRLMLEMVSGMLDAARLRAG 349

BX571656_0074: domain 1 of 1, from 196 to 252: score 38.3, E = 8.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ + HE++TPL++I++ +e++++ + ls++
BX571656_0 196 TLNRFIKDSTHEINTPLSVIMMSIETMER---------EGLSAKN-- 231

peLRledpeyreyletilreaerllrLindl<-*
++ ++ i+ +a++l++L +dl
BX571656_0 232 ----------EKKIRNIELAAKSLSHLYEDL 252

BX571656_1456: domain 1 of 1, from 125 to 189: score 38.3, E = 8.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a+l+HE+R+P+ ++ +++++Ll+ + +
BX571656_1 125 SMGQVAAHLAHEIRNPIGSVTLLSSTLLK----------RVDTAT-- 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++++ r +r+i L +sr +
BX571656_1 160 ----------KPIVLEIKKATWRVERIIKATLLFSRGLQL 189

BX571656_0283: domain 1 of 1, from 213 to 279: score 37.4, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e++ +++HEL+TPL+++++ +e+ l ++ e+
BX571656_0 213 YQKELFIGVAHELKTPLAVMKTKCEVVLI---------KPRETEK-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l++ +++++ ++++i +Ld+ r e
BX571656_0 249 ---------YVETLKSNIQSINEMNSMIKSVLDIGRQEGA 279

BX571656_0013: domain 1 of 1, from 172 to 234: score 34.5, E = 1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++ HEL+TPL I++++e+L+e +l++ +
BX571656_0 172 YMDTFFKDAMHELKTPLGIIQLNLEILRE----------KLGSHKG- 207

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++ l L +d+ + + ++
BX571656_0 208 -------------FDRANAALKVLVTLFEDIEYFIKNQHI 234

BX571656_1349: domain 1 of 1, from 175 to 228: score 32.9, E = 2.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ n+ HEL+TPLta++++a+ L++ +e +e++
BX571656_1 175 RIDSFIKNATHELNTPLTALLATAKSLQK---------GEVDEKK-- 210

peLRledpeyreyletilreaerllrLindl<-*
++++l a+++++L +dl
BX571656_1 211 -------------ISRLLLIAKQIEHLYSDL 228

BX571656_0787: domain 1 of 1, from 155 to 225: score 32.1, E = 4.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ +++H+ ++P++aI++++ L+ e++ ++ls + +
BX571656_0 155 EMGEMMGAIAHQWKQPISAISLFVMNLESEAE-----QGKLSLDSL- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++++i +++ l++ i+d++ + + + +
BX571656_0 196 ----------REMVSKINHQLLFLSETIDDFRHFFKPDKE 225

BX571656_1641: domain 1 of 1, from 158 to 220: score 30.7, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl n+ H++ TPL++I ++++lL+ + ++
BX571656_1 158 SQDRFLKNAIHDIYTPLSVIYANTDLLEL---------KIGDNPH-- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ +a++l ++ +dl l + e +
BX571656_1 194 -------------LHKIEAAAKSLHNIYSDLSYLIKKERE 220

BX571656_1952: domain 1 of 1, from 326 to 396: score 30.4, E = 1.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a se+l++++H+ R+PL+++ + + lL++ l+ ++ ++++
BX571656_1 326 ATSELLSSIAHQWRQPLNGLGLQIALLKDSLE-----SGSGNAKE-- 365

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl++++r++++l++ i+ + + + e
BX571656_1 366 ---------WLGYLNSMERSIHSLSETISKFSSFFKKERT 396

BX571656_0017: domain 1 of 1, from 211 to 281: score 28.2, E = 5.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +l H+ ++PL+aI++++++L+e l++ +el+ee +
BX571656_0 211 ELGSLMGALTHQWKQPLHAISLMTQTLEE-----LQEHGELDEEAI- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +i+++++ +++ +++++ + +
BX571656_0 252 ----------REHTTRIYSQIRFMDETLENFRHFYKPSPK 281

BX571656_1116: domain 1 of 1, from 385 to 447: score 27.8, E = 7.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ + H+++TPL++I++++ lL+ e+ +e
BX571656_1 385 SQDQFIKDSIHDINTPLSVILLNVGLLELEV-------GE------- 417

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl i++ +++l++ dl l ea
BX571656_1 418 ----------NEYLLHIKSGIRSLQHVYGDLSYLLDKEAK 447

BX571656_0904: domain 1 of 1, from 169 to 241: score 27.3, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+l + H+ ++PL+ ++++++lLl++++ t+l +++
BX571656_0 169 HLGEMLGIITHQWKQPLNILSLHSHLLLDWAN------THLAGKELE 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + +++++++ ++d++ + r
BX571656_0 210 RL--------QRFHDEMSEQIHYMSTTVDDFRNFLRQNKV 241


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 4 0|=
-13 16 1|*==
-12 59 46|======*==
-11 207 242|============================== *
-10 332 449|================================================ *
-9 356 464|=================================================== *
-8 340 347|=================================================*
-7 294 219|===============================*==========
-6 165 126|=================*======
-5 87 69|=========*===
-4 59 37|=====*===
-3 42 19|==*===
-2 26 10|=*==
-1 13 5|*=
0 3 2|*
1 3 1|*
2 2 0|=
3 1 0|=
4 2 0|=
5 2 0|=
6 1 0|=
> 7 30 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 180.6997
P(chi-square) = 7.35e-33

Total sequences searched: 2044

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: